DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt1 and Tc2n

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001020323.1 Gene:Tc2n / 500707 RGDID:1563876 Length:489 Species:Rattus norvegicus


Alignment Length:384 Identity:82/384 - (21%)
Similarity:145/384 - (37%) Gaps:96/384 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 RRFLKKRRTKDGKGKKGVDMKSVQLLGSAYKEKVQPDMEELTENAE------------------- 180
            ||||....||...|.. .|:::.:|.||....|   .|.:||.:::                   
  Rat   141 RRFLPHCETKTLYGSV-CDLRTSKLPGSPGLSK---SMLDLTTSSQRFIQRHDSFSSVPSSSSSR 201

  Fly   181 ---------------EGDEEDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEEL--PALDMGGTS 228
                           .|||.|      |||||.||.|:.::..:.:|::|..::  |: ..|.|.
  Rat   202 KNSQGSNRSLDTITLSGDERD------LGRLNVKLFYNSSAEQIWITILQCRDISWPS-SYGDTP 259

  Fly   229 DPYVKVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIG 293
            ...:|..|...|...|::.....:.:..|.|||.| ::...:.....|.|.|  ..:..|...||
  Rat   260 TISIKGILTLSKPIHFKSSAKEGSNAIDFMETFVF-AIKLQNLQAVRLAFKI--QTQTPKKKTIG 321

  Fly   294 EVKVPLCTIDLAQTIEEWRDLVSVEGEGGQEKLGDICFSLRYVPTA------------------- 339
            |     |::.|       |.|.:.|.:          :||..:|.:                   
  Rat   322 E-----CSLSL-------RTLSTQEMD----------YSLEIIPPSKFSVCQAELELGTCFQAVN 364

  Fly   340 GKLTVVILEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPY-YNESFSFEVPFE 403
            .::.:.||||:.|...........:||:.:..:|:.:.||||.:.|.:.... :.|:..|  |..
  Rat   365 SRIQLQILEAQYLPSSSTPLALSFFVKVGMFSSGELIYKKKTRLLKASSGRVKWGETMIF--PLI 427

  Fly   404 QIQK-ICLVVTVVDYDRIGTSEPIGRCILGCMGTGTE-LRHWSDMLASPRRPIAQWHTL 460
            |.:| |..::.:.....:.....:|:..:.......| :..|.:.:.:|.:.:.:||.|
  Rat   428 QTEKEIVFLIKLYSRSSVRRKHFVGQLWISEDSNNVEAVNQWKETVTNPEKVVIKWHKL 486

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity