DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and Sytl2

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001101962.2 Gene:Sytl2 / 361604 RGDID:1307647 Length:2155 Species:Rattus norvegicus


Alignment Length:580 Identity:131/580 - (22%)
Similarity:215/580 - (37%) Gaps:183/580 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KPEAEPAP----ASEPAADLESVDQKLEETHHSKFRE-----VDRQEQEVLAEKAAEA------- 60
            ||..|.||    .|.....:..::.|.:.|..|..:.     ..|||:|...|..:|:       
  Rat  1616 KPGFEEAPKEMRVSRNKRSIVLLETKGKATETSTVKSELATAYKRQEKEQGPEACSESEFSDGNT 1680

  Fly    61 ASQRIAQVESTTRSATTEAQESTTTAVPVIKKIEHVGEVVTEVIAERTGLPTWGVVAIIILVFLV 125
            :|.|    ||...::::|.:.|     ||:|.:|                               
  Rat  1681 SSNR----ESWRNTSSSEEEHS-----PVLKTLE------------------------------- 1705

  Fly   126 VFGIIFFCVRRFLKKRRTK-------DGKGKKGVDMKSVQLLGSA---YKEKVQPDMEE------ 174
                     ||..:|..:|       |...:..||....:|:.||   .|....||..|      
  Rat  1706 ---------RRAARKIPSKSLEDIPSDSSNQAKVDNLPEELVRSAEDDQKADQDPDTNECIPGIS 1761

  Fly   175 ----LTEN-------------------AEEGDEED--------------KQSEQKL--------- 193
                |.:|                   .:|.|:.:              |:|...|         
  Rat  1762 TVPSLPDNPFSHPDKLKRMSKSVPAFLQDESDDRETDTASESSYQLRRYKKSPSSLTNLSSSSGM 1826

  Fly   194 ------------------------GRLNFKLEYDFNSNSLAVTVIQAEELPALD-MGGTSDPYVK 233
                                    |.:.|.::|..:...|.|.|.|.::|.|.| ....||||||
  Rat  1827 TSLSSASGSVMSVYSGDFGNLEVKGSVQFAIDYVESLKELHVFVAQCKDLAAADAKKQRSDPYVK 1891

  Fly   234 VYLLPDKKK--KFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 296
            .||||||.|  |.:|.|.:|||:||:||...:| :.......:.|..:::..|.|.::..:|||:
  Rat  1892 TYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYK-IERQVLKTQKLNLSVWHRDTFKRNSFLGEVE 1955

  Fly   297 VPLCTIDLAQTIE---EWRDL------VSVEGEGGQEKLGDICFSLRYV---------PTAGKLT 343
            :.|.|.|......   :|..|      |::|    .|..|::..:|:||         ||.|::.
  Rat  1956 LDLETWDWDSKQNKQLKWYPLKRKTAPVALE----TENRGEMKLALQYVPEPSPGKKLPTTGEVH 2016

  Fly   344 VVILEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFE--VPFEQIQ 406
            :.:.|..:|..:. |...:.:||..|:.:..|..::||.....|.||.:|.:..::  .| |.:.
  Rat  2017 IWVKECLDLPLLR-GSHLNSFVKCTILPDTSRKSRQKTRAVGKTSNPVFNHTMVYDGFRP-EDLM 2079

  Fly   407 KICLVVTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTLKDPEET 466
            :.|:.:||.|:.:: |::.:|...:| .|||.......|.:.|.....|.|..:.:...|
  Rat  2080 EACVELTVWDHYKL-TNQFLGGLRIG-FGTGKSYGTEVDWMDSTSEEAALWEKMVNSPNT 2137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 25/139 (18%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 46/168 (27%)
C2B_Synaptotagmin-1 326..461 CDD:176047 36/145 (25%)
Sytl2NP_001101962.2 PHD_SF 5..>41 CDD:389947
rad2 <197..>425 CDD:273166
PTZ00108 <1592..1812 CDD:240271 43/244 (18%)
C2A_SLP-1_2 1850..1977 CDD:176039 44/127 (35%)
C2B_SLP_1-2-3-4 1990..2146 CDD:175987 37/152 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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