DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and Sytl5

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_848016.1 Gene:Sytl5 / 302538 RGDID:631342 Length:753 Species:Rattus norvegicus


Alignment Length:604 Identity:133/604 - (22%)
Similarity:215/604 - (35%) Gaps:183/604 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PEAEPAPASEPA---AD----LESVDQKLEETHH---------SKFREVDRQEQEVLAEKAAEAA 61
            |.:|.....|.|   ||    |.||.||  .||.         ||||...|  .|:...||....
  Rat   148 PGSEEIQNQEQAHQGADKSDTLSSVRQK--ATHDGPKRKGFLLSKFRSATR--GEIKTPKAESGR 208

  Fly    62 S----------QRIAQVESTTRSATTEA----QES---------TTTAVPVIKK----------- 92
            |          |....|..:.|.:||.:    ||:         :...:||.::           
  Rat   209 SYSLDLDNQNLQSFKSVSGSDRGSTTSSDLTDQEAGRGAPKGSCSNGGIPVTQRSPAPSARSVTS 273

  Fly    93 ----------------IEHVGEVVTEVIAERT-GLPTWGVVAIIILVFLVVFGIIFFCVR----- 135
                            ||.:.|.:|:.....| |.|:           :.|.|......|     
  Rat   274 ISSREHGFENSMALATIESISEELTKSHRRNTSGTPS-----------IAVSGTSLSSERSRSEL 327

  Fly   136 ----------RFLKKRRTKDGKGKKGVDMKS-------VQLLGSAYKEKVQPDMEELTENAEEGD 183
                      ......|::...|....|:.|       |.|:.|.:..........|:.:::.|.
  Rat   328 DLSESFAEDLEDTSSIRSRSVPGALDKDLNSLEDTEDGVDLVSSRFSANTHSLASGLSTSSQAGS 392

  Fly   184 EE--------DKQSE--------------------QKLGRLNFKLEYDFNSNSLAVTVIQAEELP 220
            :.        |..|:                    :..|.:...:.|.:.:..|.:.|.....|.
  Rat   393 DRKRSYLHVPDADSDTTSLNSMMSVYSETGDYGNVKVTGEILLHISYCYKTGGLYIFVKNCRNLA 457

  Fly   221 ALD-MGGTSDPYVKVYLLPDKKK--KFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFD 282
            ..| ....:|.|||.||||||.:  |.:||:...| :|.||||..: ::.:.....:||..:::.
  Rat   458 IGDEKKQRTDAYVKSYLLPDKTRNNKRKTKIRTGT-NPEFNETLKY-TISHTQLETRTLQLSVWH 520

  Fly   283 FDRFSKHDQIGEVKVPLCTIDLAQTIEEW---RDLVSVEGEGGQEKLGDICFSLRYVP------- 337
            :|||.::..:|||::...:.:.....:||   :..|.:..:...:..|::...|||:|       
  Rat   521 YDRFGRNSFLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRYIPPEENLIF 585

  Fly   338 ----------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKK 380
                                  :.|.|.|.|.|||||..:..||.||.:||..::.:..:..|.|
  Rat   586 PVEQPQGKKIFKKGKKKESPAISGGILEVFIKEAKNLTAVKAGGTSDSFVKGYLLPDDNKATKHK 650

  Fly   381 TSIKKCTLNPYYNESFSFEVPFEQ-IQKICLVVTVVDYD-----------RIGTSEPI--GRCIL 431
            |::.|.::||.:|..|.|...:.| ||..||.:|:.|.:           |:.:...|  |:.:.
  Rat   651 TAVVKKSVNPQWNHVFIFSGLYPQDIQNACLELTIWDKEAFSSNIFLGGVRLNSGSGISHGKAVD 715

  Fly   432 GCMGTGTELRHWSDMLASP 450
            .....|.|.|.|..|..:|
  Rat   716 WMDSRGEEQRLWQKMADNP 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 41/204 (20%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 35/129 (27%)
C2B_Synaptotagmin-1 326..461 CDD:176047 45/168 (27%)
Sytl5NP_848016.1 FYVE_Slp5 62..108 CDD:277305
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..188 13/41 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 221..283 8/61 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 298..359 10/71 (14%)
C2A_SLP-4_5 430..553 CDD:175995 35/124 (28%)
C2B_SLP_1-2-3-4 567..745 CDD:175987 45/168 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.