DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and Syt2

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_038946276.1 Gene:Syt2 / 24805 RGDID:3804 Length:499 Species:Rattus norvegicus


Alignment Length:441 Identity:249/441 - (56%)
Similarity:307/441 - (69%) Gaps:32/441 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 REVDRQEQEVLAEKAAEAASQRIAQV----ESTTRSATTEAQESTTTAVPVIKKIEHVGEVVTEV 103
            |.:.::.||.:...|...|:..:|..    .||..:.|.|:||.....:    |.:...|:    
  Rat    79 RNIFKRNQEPIVAPATTTATMPLAPAAPVDNSTESTGTGESQEDMFAKL----KDKFFNEI---- 135

  Fly   104 IAERTGLPTWGVVAIIILVFLVVFGIIF-FCVRRFLKKRRTKDGKGKKGVDMKSVQLLGSAYKEK 167
              .:..||.|.::|:.::..|::....| .|.:...||::.|..|||   .||:...:......:
  Rat   136 --NKIPLPPWALIAMAVVAGLLLLTCCFCICKKCCCKKKKNKKEKGK---GMKNAMNMKDMKGGQ 195

  Fly   168 VQPDMEE-LTENAEEGDEEDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALDMGGTSDPY 231
            ...|.|. |||...||:||  :..:.||:|.|.|:|||.:|.|.|.|:||.||||||||||||||
  Rat   196 DDDDAETGLTEGEGEGEEE--KEPENLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPY 258

  Fly   232 VKVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 296
            |||:||||||||:|||||||||:|.|||||||| :||.:...||||.||:|||||||||.|||||
  Rat   259 VKVFLLPDKKKKYETKVHRKTLNPAFNETFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVK 322

  Fly   297 VPLCTIDLAQTIEEWRDLVSVEGEGGQ----EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV 357
            ||:.|:||.|.|||||||     :||:    |||||||.|||||||||||||.||||||||||||
  Rat   323 VPMNTVDLGQPIEEWRDL-----QGGEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDV 382

  Fly   358 GGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQKICLVVTVVDYDRIGT 422
            ||||||||||.:||||||||||||::||.|||||:|||||||:|||||||:.:||||:|||::|.
  Rat   383 GGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGK 447

  Fly   423 SEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTLKDPEETDEIL-KN 472
            :|.||:..:|...|||||||||||||:|||||||||:||..||.|.:| ||
  Rat   448 NEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGKN 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 21/97 (22%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 92/123 (75%)
C2B_Synaptotagmin-1 326..461 CDD:176047 107/134 (80%)
Syt2XP_038946276.1 Syt2_N 81..193 CDD:409249 28/124 (23%)
C2A_Synaptotagmin-1-5-6-9-10 219..341 CDD:176031 92/127 (72%)
C2B_Synaptotagmin-1 351..486 CDD:176047 107/134 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 173 1.000 Domainoid score I3592
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 470 1.000 Inparanoid score I1456
OMA 1 1.010 - - QHG48342
OrthoDB 1 1.010 - - D394604at33208
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 1 1.000 - - otm45282
orthoMCL 1 0.900 - - OOG6_106413
Panther 1 1.100 - - LDO PTHR10024
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.840

Return to query results.
Submit another query.