DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and Syt4

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_033334.2 Gene:Syt4 / 20983 MGIID:101759 Length:425 Species:Mus musculus


Alignment Length:425 Identity:149/425 - (35%)
Similarity:214/425 - (50%) Gaps:66/425 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 VTEVIAERTGLPTWGVVAIIILVFLVVFGIIFF----CVRRFLKKRRT----------------- 143
            :|....|...:||   |..|...|.:||.:..|    |.||..|..:|                 
Mouse     4 ITTSRVEFDEIPT---VVGIFSAFGLVFTVSLFAWICCQRRSAKSNKTPPYKFVHVLKGVDIYPE 65

  Fly   144 -------------KDGKGKKG-------VDMKSVQLLGSAYK-----------EKVQPDMEELTE 177
                         .:.|||..       :|::...|.|:..|           |.|.|.:...||
Mouse    66 NLSSKKKFGGDDKSEVKGKAALPNLSLHLDLEKRDLNGNFPKANPKAGSSSDLENVTPKLFTETE 130

  Fly   178 NAEEGDEEDKQS--------EQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALD-MGGTSDPYVK 233
            ......|..|.|        ::|||.|...|||:|...:..|.:.:|:.|||:| ...|||||:|
Mouse   131 KEANSPESLKSSTSLTSEEKQEKLGTLFLSLEYNFEKKAFVVNIKEAQGLPAMDEQSMTSDPYIK 195

  Fly   234 VYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVP 298
            :.:||:||.:.:|:|.||||.|||:|||||..:||......:|.|.:..|||||:.|.||||.:|
Mouse   196 MTILPEKKHRVKTRVLRKTLDPVFDETFTFYGIPYPHIQELSLHFTVLSFDRFSRDDVIGEVLIP 260

  Fly   299 LCTIDLAQ-TIEEWRDLVSVEGEGGQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSD 362
            |..|:|:. .:...|:::....:....: |::..||.|..|...||||:|:|::|.|.||.||||
Mouse   261 LSGIELSDGKMLMTREIIKRNAKKSSGR-GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSD 324

  Fly   363 PYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQKICLVVTVVDYDRIGTSEPIG 427
            ||||:.:....||:.||||.:||||.|..:||.|.|::|.|.:::|.:...|:|.:|...:|.||
Mouse   325 PYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIG 389

  Fly   428 RCILGCMGTGTELRHWSDMLASPRRPIAQWHTLKD 462
            |.:||....|:...||.::...|||.||:||.|.|
Mouse   390 RLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 11/39 (28%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 57/125 (46%)
C2B_Synaptotagmin-1 326..461 CDD:176047 60/134 (45%)
Syt4NP_033334.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..147 5/19 (26%)
C2A_Synaptotagmin-4-11 153..279 CDD:176034 57/125 (46%)
C2B_Synaptotagmin-4 288..423 CDD:176049 60/135 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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