DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt1 and rph3aa

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_005172658.1 Gene:rph3aa / 101886567 ZFINID:ZDB-GENE-090706-2 Length:598 Species:Danio rerio


Alignment Length:497 Identity:150/497 - (30%)
Similarity:224/497 - (45%) Gaps:75/497 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SETDAKPEA-EPAPASEPAADLESV-----DQKLE-ETHHSKFREVDRQEQEVLAEKAAEAASQR 64
            |.|...|.| :.:|.:....:.|||     :|::. ||..:|     |:|:.|::::|.|....|
Zfish   142 SRTSTNPSANQQSPITSQTKNAESVQVTGREQQISAETMPAK-----REERSVISQRALEEDGGR 201

  Fly    65 IAQVESTTRS-ATTEAQESTTTAVPVIKKIEHVGEVVTEVIAERTGLPTWGVVAIIILVFLVVFG 128
               ..||.:| |..|.|    |..||:|:     ||  .|.:.|....::....|          
Zfish   202 ---HRSTVQSDAAMEGQ----TFSPVVKR-----EV--PVQSSRPPASSFSTTPI---------- 242

  Fly   129 IIFFCVRRFLKKRRTKDGKGKKGVDMKSVQLLGSAYKEKV--QPDMEELTENAEEGDEEDKQSEQ 191
                      :|......:.:....|::...|.:|.....  ||. ...||:.|:.:..|.....
Zfish   243 ----------QKDTMSRPEARAPPAMQADARLPAANSVPASRQPP-PPTTEDEEDANSYDSDDAT 296

  Fly   192 KLGRLNFKLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLS 254
            .||.|.|.|.|....|.|...:|:|:.|..:|..|.:|||||::|||  .|..|..||..|.||:
Zfish   297 TLGMLEFSLLYTEEKNELHCNIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRTTLN 361

  Fly   255 PVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQ------TIEEWRD 313
            ||:|||..:..:...|...|||..::.|.|:|..::.|||.:|.|..:.|.|      .:|....
Zfish   362 PVWNETLVYHGITNEDMQKKTLRLSVSDEDKFGHNEFIGETRVVLKKLKLNQKKTYNVCLERVIP 426

  Fly   314 LVSVEGEGGQ---------------EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDP 363
            :....|.|..               |:.|.|..||.|....|:|.|.::...:|..||..|.|||
Zfish   427 VRRTAGGGASRGMALYEEELKDDEAEERGRILVSLTYNSQQGRLIVGVVRCAHLAAMDSNGYSDP 491

  Fly   364 YVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQKICLVVTVVDYDRIGTSEPIGR 428
            :|||.:..:..:..|.||.|||.||||.:||.||:|:...::.|..|.|:|.|||...:::.||.
Zfish   492 FVKICLKPDMGKKAKYKTQIKKKTLNPEFNEEFSYEIKHGELAKKTLDVSVWDYDMGKSNDFIGG 556

  Fly   429 CILGCMGTGTELRHWSDMLASPRRPIAQWHTL--KDPEETDE 468
            |.||....|..|:||.:.|.:..:.|.:||.|  :...|.|:
Zfish   557 CQLGITAKGECLKHWYECLKNKDKKIERWHVLLNQSSVEADD 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 33/136 (24%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 48/131 (37%)
C2B_Synaptotagmin-1 326..461 CDD:176047 54/136 (40%)
rph3aaXP_005172658.1 PHD_SF 53..131 CDD:304600
C2A_Rabphilin_Doc2 298..421 CDD:176000 47/122 (39%)
C2B_Rabphilin_Doc2 456..588 CDD:176030 52/131 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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