DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt1 and LOC100497338

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_002938753.2 Gene:LOC100497338 / 100497338 -ID:- Length:398 Species:Xenopus tropicalis


Alignment Length:390 Identity:110/390 - (28%)
Similarity:192/390 - (49%) Gaps:60/390 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 VVAIIILVFLVVFGIIFFCVRRFLK-----KRRTK---DG-----KGKKGVDMKSV-----QLLG 161
            ::.:.|.:|||...::.:.:.::|:     .|..|   ||     |....:.:|||     ::..
 Frog    23 LLGVAIFLFLVAIFLLVYNLYKYLRYKSSVARNEKTYLDGTYVEKKTTSNILLKSVAPTFLEITR 87

  Fly   162 SAYKEKVQ---PDMEELTE-------NAEEGDEEDKQSE-QKLGRLNFKLEYDFNSNSLAVTVIQ 215
            .....|:|   .:||:|.|       :.|..|:.|.... ...|:|...|.||....:|.:.||:
 Frog    88 KEQDSKIQLMRKEMEKLEERLTPSPPSTESLDDLDSNPPLMPRGKLKLSLYYDKKKMALLINVIE 152

  Fly   216 AEELPALDMGGTSDPYV--KVYLLPDKK--------KKFETKVHRKTLSPVFNETFTFKSLPYAD 270
            |.:|||    .:.||:|  ||:...|..        .:::|||.:.:.:|||.|:||. :|..:.
 Frog   153 ATDLPA----HSHDPFVRIKVFSKADDPHSSVQTIIHEWDTKVVKNSRNPVFVESFTC-TLKESQ 212

  Fly   271 AMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQTIEEWRDLVSVEGEGGQEK----LGDICF 331
            .::.:|.|.:.|||::|:|..|||.:..|..:..::|:|.:.||        |||    :|::..
 Frog   213 LLSTSLKFEVKDFDKYSRHTLIGETRATLQGLKTSKTLELYEDL--------QEKTKDAIGEVLI 269

  Fly   332 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESF 396
            ||:.:|||.|:.|.||:.|. ..:......|.|.:|.:..|..:.|.:|:|::..:....:||:|
 Frog   270 SLKCLPTAQKIEVGILKFKT-SSLSTISERDVYARIDVFTNQHKQKHQKSSLRAKSKVTVFNETF 333

  Fly   397 SFEVPFEQIQKICLVVTVVDYDRIGTSEP-IGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTL 460
            .|.:| :..:..||::..: |:.|.:... ||:..||...|..|..||..|:.:.|:|:|:||.|
 Frog   334 LFGLP-DPGKTHCLILVSL-YETIASGRKLIGQTSLGNQNTKAEDGHWELMMQTLRQPVAKWHPL 396

  Fly   461  460
             Frog   397  396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 4/20 (20%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 43/133 (32%)
C2B_Synaptotagmin-1 326..461 CDD:176047 42/136 (31%)
LOC100497338XP_002938753.2 C2 129..258 CDD:417471 43/141 (30%)
C2 265..396 CDD:417471 41/133 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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