DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt1 and syt12

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_002936546.1 Gene:syt12 / 100496899 XenbaseID:XB-GENE-988426 Length:414 Species:Xenopus tropicalis


Alignment Length:447 Identity:118/447 - (26%)
Similarity:208/447 - (46%) Gaps:87/447 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PAPASEPAADLESVDQKLEETHHSKFREVDRQEQEVLAEKAAEAASQRIAQVESTTRSATTEAQE 81
            |:|:..|..|...:.||. .|.||..|: .||       .||:.|: .:|.:..|..|       
 Frog    51 PSPSPFPNYDYRYLKQKY-GTSHSDVRK-KRQ-------PAAKPAN-NMANLNDTYES------- 98

  Fly    82 STTTAVPVIKKIEHVGEVVTEVIAERTGLPTWGVVAIIILVFLVVFGIIFFCVRRFLKKRRTKDG 146
                       |...|.:  |:|.:...:..:|:                      |:|..:.| 
 Frog    99 -----------INEFGPI--ELINKDLEMTPYGM----------------------LRKSISTD- 127

  Fly   147 KGKKGVDMKSVQLLGSAYKEKVQPDMEELTENAEEGDEEDKQSEQKLGRLNFKLEYDFNSNSLAV 211
                  .:.||..:|:.:.:.:                       .:|::...::||.:||:|.|
 Frog   128 ------SLSSVSSIGNNFGQDI-----------------------TVGQIEVTMDYDVHSNTLHV 163

  Fly   212 TVIQAEE-LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKT 275
            .:||.:: |...:.|.....:|.:.||||::....:::.....|.:|:|||:....|.|...| :
 Frog   164 ALIQGKDLLERKEDGNFESCFVHISLLPDEQIVGISRIQGNAYSVMFDETFSIPLDPLALEEN-S 227

  Fly   276 LVFAIFDFDRFSKHDQIGEVKVPLCTIDLA-QTIEEWRDLVSVEGEGGQEKLGDICFSLRYVPTA 339
            |.|:||..|...:....|..::.|..:||| :....|..|..|  ....:.:|:|..||.|:|||
 Frog   228 LKFSIFGIDGDDRKVSTGVAELKLSDLDLALRPFNTWIYLQDV--NKATDTVGEILLSLSYLPTA 290

  Fly   340 GKLTVVILEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQ 404
            .:||||:::.:||...:....:||:||:.::|:|:::.||||::|:...||.:||:..|.||...
 Frog   291 ERLTVVVVKVRNLLWTEGKTTADPFVKVYLLQDGRKISKKKTAVKRDDRNPVFNEAMIFSVPAIV 355

  Fly   405 IQKICLVVTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTLK 461
            :|::.|.:||.:....|.:|.||..|:|...:|..:.||:.|||:.|:|::.||.::
 Frog   356 LQELSLRITVAECCEDGRAENIGHVIIGPSTSGMGMTHWNQMLATLRKPVSMWHQIR 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 23/118 (19%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 36/125 (29%)
C2B_Synaptotagmin-1 326..461 CDD:176047 52/134 (39%)
syt12XP_002936546.1 C2 146..257 CDD:387358 32/111 (29%)
C2B_Synaptotagmin-12 277..412 CDD:176051 52/134 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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