DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and LOC100486361

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_002931826.4 Gene:LOC100486361 / 100486361 -ID:- Length:959 Species:Xenopus tropicalis


Alignment Length:507 Identity:116/507 - (22%)
Similarity:213/507 - (42%) Gaps:97/507 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NAKSET---DAKPEAEPAPASEPAADLESVDQKLEETHHSKFREVDRQEQEVLAEKAAEA----- 60
            :.|.|:   :.|||.:..|.|.....:::|....|:...:..:...|.| :|:.....|:     
 Frog   480 SCKEESVTPEIKPEVKGTPYSNVQILIDTVTSDEEQGATASVKAAQRSE-DVVEHATCESEDGKS 543

  Fly    61 ---------ASQRIAQVESTTRS-----ATTEAQESTTTAVPVIKKIEHVGEV--VTEVIAERTG 109
                     .||.|.  .::.||     .:||......|....:.:.|...|:  .|..:...|.
 Frog   544 LDGNVDSNPTSQAIG--VTSARSLVNIYTSTETYNKPQTLSHQLLEPERAKELSRSTPALLSETE 606

  Fly   110 LPTWGVVAIIILVFLVVFGIIFFCVRRFLKKRRTKDGKGKKGVDMKSVQLLGSAYKEKVQPDMEE 174
            ..|...::.                  .||:.|..........||.||..:.::.......|...
 Frog   607 SDTASEISF------------------QLKRHRKTHSSDSNSSDMASVSSVSNSVLSVYSGDFGS 653

  Fly   175 LTENAEEGDEEDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALD-MGGTSDPYVKVYLLP 238
            :          |.|     |.:.|.|:||..:....::|.|.::|..:| ..|.||||||.||||
 Frog   654 V----------DAQ-----GAVEFSLDYDEKNREFQISVSQCKDLAIVDEKKGRSDPYVKTYLLP 703

  Fly   239 DKKK--KFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCT 301
            ||.:  |.:|.|.|:|.:||:||...:|.......:.| |..:::..|...::..:||:::.|.:
 Frog   704 DKARMGKRKTSVKRRTTNPVYNEVLRYKIEKMVLLIQK-LNLSVWHNDPLGRNSFLGEMEIDLTS 767

  Fly   302 IDLAQTIEEWRDLV--SVEGEGGQEKLGDICFSLRYV---------PTAGKLTVVILEAKNLKKM 355
            .|.:.|...|..|.  ||....|.:.||.:..|::|:         ||:|::.:.:.:.|:|.::
 Frog   768 WDWSNTKSNWYPLKPRSVSAMNGVDHLGVMNLSIKYIPPGSLGPKHPTSGEVHIWVKDTKDLPQL 832

  Fly   356 DVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFE-VPFEQIQKICLVVTVVDYDR 419
            ...|: |.:||..::.:..:...:||.:.|...||.:|.:..:: ...|.::..|:.:||.|:::
 Frog   833 RPSGV-DSFVKCYVLPDTSKKSYQKTRVIKKDSNPVFNHTIVYDGFHTEDLRDACVELTVWDHEK 896

  Fly   420 IGTSEPIGRCILGCMGTG--------------TELRHWSDMLASPRRPIAQW 457
            : ::..:|...|| :|||              .|:..|.:|:::|.    :|
 Frog   897 L-SNHFLGGIRLG-LGTGFSYGIAVDWMDSTQEEVAFWQEMMSTPN----EW 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 26/154 (17%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 42/128 (33%)
C2B_Synaptotagmin-1 326..461 CDD:176047 35/156 (22%)
LOC100486361XP_002931826.4 PHD_SF 13..>68 CDD:419867
C2A_SLP-1_2 657..781 CDD:176039 42/129 (33%)
C2B_SLP_1-2-3-4 795..950 CDD:175987 34/155 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.