DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment colt and YMC2

DIOPT Version :9

Sequence 1:NP_477221.1 Gene:colt / 33470 FlyBaseID:FBgn0019830 Length:306 Species:Drosophila melanogaster
Sequence 2:NP_009662.3 Gene:YMC2 / 852401 SGDID:S000000308 Length:329 Species:Saccharomyces cerevisiae


Alignment Length:327 Identity:114/327 - (34%)
Similarity:150/327 - (45%) Gaps:53/327 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TTENVSTERKANPV-KSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAK 66
            ||.|...|..:|.| |....|..|||..||.|.|.||.||||||......        |.:....
Yeast    21 TTPNEKRELSSNRVLKDIFAGTIGGIAQVLVGQPFDTTKVRLQTATTRTT--------TLEVLRN 77

  Fly    67 TIKNEGVRGLYKGMSAPLTGVAPIFAMC--------------FAGYALGKRLQQRGEDAKL---- 113
            .:|||||...|||...||.||    .:|              |..|...|......:|..|    
Yeast    78 LVKNEGVFAFYKGALTPLLGV----GICVSVQFGVNEAMKRFFQNYNASKNPNMSSQDVDLSRSN 138

  Fly   114 TYP--QIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQGGERKYNGMIDCAGKLYKEGGLRSVFK 176
            |.|  |.:|.|...|:.::.:.:|.|:|::.||||...||:|::.|..||..||..:|||   .:
Yeast   139 TLPLSQYYVCGLTGGVVNSFLASPIEQIRIRLQTQTSNGGDREFKGPWDCIKKLKAQGGL---MR 200

  Fly   177 GSCATMLRDLPANGLYFLVYEALQDVAKSKSETGQISTASTI------FAGGVAGMAYWILGMPA 235
            |...||:|.....|.||||||||  ||:   |.|...|.:.|      ..|..:|...|:...|.
Yeast   201 GLFPTMIRAGHGLGTYFLVYEAL--VAR---EIGTGLTRNEIPPWKLCLFGAFSGTMLWLTVYPL 260

  Fly   236 DVLKSRLQS----APEGTYKHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELAN 296
            ||:||.:|:    .|:  ||:.|..|.|.:..|:|..|.::|..|.|:|:.|.|.|.|...||..
Yeast   261 DVVKSIIQNDDLRKPK--YKNSISYVAKTIYAKEGIRAFFKGFGPTMVRSAPVNGATFLTFELVM 323

  Fly   297 KF 298
            :|
Yeast   324 RF 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coltNP_477221.1 Mito_carr 12..107 CDD:395101 36/109 (33%)
Mito_carr 112..202 CDD:395101 38/95 (40%)
Mito_carr 210..299 CDD:395101 32/99 (32%)
YMC2NP_009662.3 Mito_carr 34..120 CDD:395101 33/97 (34%)
Mito_carr 138..223 CDD:395101 35/87 (40%)
Mito_carr 235..328 CDD:395101 30/93 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0758
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54095
OrthoFinder 1 1.000 - - FOG0000326
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1756
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.850

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