DRSC/TRiP Functional Genomics Resources

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Protein Alignment colt and MGC108450

DIOPT Version :9

Sequence 1:NP_477221.1 Gene:colt / 33470 FlyBaseID:FBgn0019830 Length:306 Species:Drosophila melanogaster
Sequence 2:NP_001015800.1 Gene:MGC108450 / 548517 -ID:- Length:301 Species:Xenopus tropicalis


Alignment Length:308 Identity:96/308 - (31%)
Similarity:144/308 - (46%) Gaps:37/308 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RKANPVKSFL---TGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEG 72
            |..|.:::.:   .|..||...||:|.|.||.||::||.|       .||||..|||.||.|..|
 Frog     2 RSNNSIQAAIDLTAGAAGGTACVLTGQPFDTAKVKMQTFP-------SLYRGLMDCAVKTYKQMG 59

  Fly    73 VRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQR----GEDAKLTYPQIFVAGSFSGLFSTLIM 133
            :.|.|||.|..|.......::.|..|...::..:|    .::|:|.......||||:..|:.|.:
 Frog    60 LTGFYKGTSPALLANISENSVLFMSYGFCQKAVRRIVGLDKNAELNDLHNATAGSFAAAFAALAL 124

  Fly   134 APGERIKVLLQTQQ----------GQGGERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPA 188
            .|.|.:|..||...          ||      |.:......:.:..|....:.|..:||||::|.
 Frog   125 CPTELVKCRLQAMHEMTLSGKVTVGQ------NTVWSVVKSILRTDGPMGFYHGLSSTMLREVPG 183

  Fly   189 NGLYFLVYEALQD----VAKSKSETGQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEGT 249
            ...:|..||..:.    ..|:|.:.|.:   ..|.:|||.|::.|::..|.|.:|||:|......
 Frog   184 YFFFFGGYELSRSCFVTTGKTKDDLGIV---PLIISGGVGGISLWLVVFPVDCVKSRIQVLSMTG 245

  Fly   250 YKHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELANK 297
            .:.|..|.|..::..:|.:|||.|:.|.::||||||.|.|...|.:.|
 Frog   246 KQAGFLSTFGRILRNEGVMALYSGLKPTLIRAFPANGALFVAYEYSRK 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coltNP_477221.1 Mito_carr 12..107 CDD:395101 34/97 (35%)
Mito_carr 112..202 CDD:395101 25/103 (24%)
Mito_carr 210..299 CDD:395101 32/88 (36%)
MGC108450NP_001015800.1 Mito_carr 9..90 CDD:365909 33/87 (38%)
Mito_carr <125..195 CDD:365909 18/75 (24%)
Mito_carr 208..297 CDD:365909 32/89 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54095
OrthoDB 1 1.010 - - D1072378at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.930

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