DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment form3 and FH4

DIOPT Version :10

Sequence 1:NP_001097527.1 Gene:form3 / 3346238 FlyBaseID:FBgn0053556 Length:1717 Species:Drosophila melanogaster
Sequence 2:NP_001319073.1 Gene:FH4 / 839028 AraportID:AT1G24150 Length:763 Species:Arabidopsis thaliana


Alignment Length:707 Identity:149/707 - (21%)
Similarity:274/707 - (38%) Gaps:144/707 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 SP--SPPPSLSSESASSATSPVSGSASTSVTPSPSPLHLQRRLTFCGSLSRYSCAALQLVQNLKK 205
            ||  |||.:.||.|:.|....:                |:..|....|....:.....||...::
plant    56 SPVLSPPQNPSSSSSDSDRGNI----------------LRAVLITAASTLLVAAVFFFLVHKCRR 104

  Fly   206 VAQSVGDIIVQLDVFVEQQECDEAQSLQAPDGINL-----------NSHLDVFYAILRQVADTPQ 259
            ....||.:    |..::......|::..|.:|...           .:.|||.|  .|::..:.:
plant   105 RRNRVGGV----DNTLQPPVPPLAEAALAREGFTRFGGNVKGLILDENGLDVLY--WRKLQQSQR 163

  Fly   260 EVPFLNILQHLLRIDPKEPLSDIIWDTTERLVHRATLLESHEDSVRLLRTPSSQKFACQSCRGSD 324
            :....:..:.::..|.:|  .::|:..:::.....|       ...|||..||...:........
plant   164 DNKGGSFRKEIIHGDDEE--KNVIYSKSKKKSGPVT-------ETPLLRGRSSTSHSVIHNDNYR 219

  Fly   325 ASSPTRKPSQPVGVSAKTTPPPPPPPMAPAAPPPPPPPI-NGAAPPPPPPPMINGGALPPPPPPP 388
            .::.|..|...........|.|.|||     |||||.|: ..|.|||||||.:......||||||
plant   220 NATTTHPPHVKTDSFEFVKPDPTPPP-----PPPPPIPVKQSATPPPPPPPKLKNNGPSPPPPPP 279

  Fly   389 SMQMASRPRTPDPLAAEAVATAILLPQQDTPAPK-----------AKMKTINWGKIPHNKVLGKQ 442
            ..:.|:       |::.|       .::..|||:           .|:|.::|.|:  |......
plant   280 LKKTAA-------LSSSA-------SKKPPPAPRGSSSGESSNGQVKLKPLHWDKV--NPDSDHS 328

  Fly   443 NIWSIVASNHQDSPMQDIDWNEMEGLFCLQTASAQGSPKLGRDGSQAAAGSNGCDTLDRKSKKES 507
            .:|..:     |......|.:.||.||. ..|..:.||..|.|              .:.|....
plant   329 MVWDKI-----DRGSFSFDGDLMEALFG-YVAVGKKSPDDGGD--------------KKPSSASP 373

  Fly   508 TEITLLDGKRSLNVNIFLKQFRTSNDDIIQLIRQGAHEEIGAERLRGLLKIMPEVDELDMLKGFN 572
            .:|.:||.::|.|..|.||....:.|::::.:.:|  .:...:.|..|.:|.|..:|...:..|:
plant   374 AQIFILDPRKSQNTAIVLKSLGMTRDELVESLMEG--HDFHPDTLERLSRIAPTKEEQSAILQFD 436

  Fly   573 GDKARLGNAEKFLLQLLE-VPNYKLRIESMLLKEEFAANVAYLEPCINSMLYAGDDLLNNKTLQE 636
            ||...|.:||.||..||: ||....|:.::|.:..:...::.....:.::..|..:|.:.....:
plant   437 GDTKMLADAESFLFHLLKAVPCAFTRLNALLFRANYYPEISNHNKNLQTLDLACTELRSRGLFVK 501

  Fly   637 VLYMVVVAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHFV----------------- 684
            :|..::.:||.:|:|... :|....|::|.||:|:::......|::||                 
plant   502 LLEAILKSGNRMNAGTARXDAQAFNLTALLKLSDVKSVDGKTTLLNFVVEEVVRSEGKRCVLNRR 566

  Fly   685 ---------------ALQAEKRNPELLQ--------FTGQLSNLESASKTTSEQINNEINTLDGR 726
                           .:..|::..|.|:        .:.:.:|::.|:....:.:......|..|
plant   567 TNRSFSRSSSSSISEVISKEEQEKEYLRLGLPVVGGLSSEFTNVKKAAAVDYDTVAATCLALTSR 631

  Fly   727 IRRIARQIEQPATD----VDIKEQMADFLQAAESELSVLQAGMKQVESMRLKMSEFF 779
            .:...|.:.|...|    |...::|.:||.:.|.|:.:.:...|:|..:..:.:|::
plant   632 AKDARRVLAQSEGDNKEGVRFVKKMNEFLDSVEEEVKLAKEEEKKVLELVKRTTEYY 688

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
form3NP_001097527.1 Drf_FH3 48..309 CDD:461885 31/178 (17%)
FH2 415..803 CDD:396655 85/421 (20%)
PTZ00449 <1145..1465 CDD:185628
FH4NP_001319073.1 FH2 310..713 CDD:396655 82/403 (20%)
Blue background indicates that the domain is not in the aligned region.

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