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Protein Alignment form3 and Grid2ip

DIOPT Version :10

Sequence 1:	NP_001097527.1	Gene:	form3 / 3346238	FlyBaseID:	FBgn0053556	Length:	1717	Species:	Drosophila melanogaster
Sequence 2:	NP_001152793.1	Gene:	Grid2ip / 170935	MGIID:	2176213	Length:	1203	Species:	Mus musculus

Alignment Length:	753	Identity:	175/753 - (23%)
Similarity:	277/753 - (36%)	Gaps:	150/753 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    99 NCVIISAATLQERIRIRNEFIGLKVLPLLNNLRLLEAGNVESSASPSPPPSLSSESASSATSPVS 163
            |..::||...:...|:.:.|.|             :.|.:..|.:..|.|||...|.....|.||
Mouse   540 NPKMMSAVYAELESRLNSSFKG-------------KIGTMSKSRASPPVPSLVGTSGPRTLSGVS 591

  Fly   164 GSASTSVTPSP--SPLHLQRRLTFC-GSLSRYSCAALQLVQNL-----KKVAQSVGDIIVQLDVF 220
            . .|..:.|||  .||        | |.|:..|.:......:|     ......:|.|
Mouse   592 W-PSDRLLPSPCYDPL--------CSGGLASPSSSESHPYASLDSSRAPSPQPGLGSI------- 640

  Fly   221 VEQQECDEAQSLQAPDGINLNSHLDVFYAILRQV--ADTPQEVPFLNILQHLLRIDPKEPLSDII 283
                   .|.|..:||.|...|...:| |..|.|  .||.:   ||:.|...|     .|...|:
Mouse   641 -------HADSPPSPDPIRPPSRRKLF-AFSRPVRSRDTDR---FLDALSEQL-----GPRLSIV 689

  Fly   284 WD--TTERLVHRATLLESHEDSVRLLRTPSSQKFACQSCRGSDASSPTRKPSQPVGVSAKTTPPP 346
            .|  |.|.....   :..|:|....:....|....|.|.....:|......|..:
Mouse   690 DDFLTPENDYEE---MSFHDDQGSFVTNERSSASECVSSSEEGSSLTYSSISDHI---------- 741

  Fly   347 PPPPMAPAAPPPPP------------------PP---------INGAAPPPPPPPMINGGALPPP 384
            ||||::|  |||||                  ||         ||...|||||||:       ||
Mouse   742 PPPPLSP--PPPPPLPFHDPKPSSRTSDGPRGPPQSLTKPLTQINHPVPPPPPPPL-------PP 797

  Fly   385 PPPPSMQMASRPRTPDPLAAEAVATAILLPQQDTPAPKAKMKTINWGKIPHNKVLGKQNIWSIVA 449
            |.|.:..|.||.                :..:.:......:|.:.|.::.::    :..||..:.
Mouse   798 PVPCAPPMLSRG----------------VGHRRSETSHMSVKRLRWEQVENS----EGTIWGQLG 842

  Fly   450 SNHQDSPMQD-IDWNEMEGLFCLQTASAQGSPKLGRDGSQAAAGSNGCDTLDRKSKKESTEITLL 513
            .:.....:.| :.:.::|..|     ..|..||       ...|.      :...|||..||  |
Mouse   843 EDSDYDKLSDMVKYLDLELHF-----GTQKPPK-------PVPGP------EPFRKKEVVEI--L 887

  Fly   514 DGKRSLNVNIFLKQFRTSNDDIIQLIRQGAHEEIGAERLRGLLKIMPEVDELDMLKGFNGDKARL 578
            ..|::.|.:|.|...:.:..::.|::.......:....|..||...|:.||....:.|.....||
Mouse   888 SHKKAYNTSILLAHLKLTPGELRQVLMSMEPRRLEPAHLAQLLLFAPDADEEQRYQAFREAPGRL 952

  Fly   579 GNAEKFLLQLLEVPNYKLRIESMLLKEEFAANVAYLEPCINSMLYAGDDLLNNKTLQEVLYMVVV 643
            ...::|:||:|.||.||.|:.|:..:.........:...:..:..|..:|.|::.|.::|..|:.
Mouse   953 SEPDQFVLQMLSVPEYKTRLRSLHFQATLQEKTEEIRGSLECLRQASLELKNSRKLAKILEFVLA 1017

  Fly   644 AGNFLNSGGYAGN-AAGVKLSSLQKLTDIRANKPGMNLIHFVALQAEKRNPELLQFTGQLSNLES 707
            .||:||.|....| ..|.|::.|.:|...:........:|.:|....:..||||.|...|..:..
Mouse  1018 MGNYLNDGQPKTNKTTGFKINFLTELNSTKTVDGKSTFLHILAKSLSQHFPELLGFAQDLPTVPL 1082

  Fly   708 ASKTTSEQINNEINTLDGRIR--RIARQIEQPATDVDIKEQMADFLQAAESELSVLQAGMKQVES 770
            |:|.....:..::..|...:.  ::|.|...|:::......||.||:.|:..|..|....::...
Mouse  1083 AAKVNQRALTGDLADLHDTVSEIQVACQSMAPSSEDRFAVVMASFLETAQPALRALDGLQREAME 1147

  Fly   771 MRLKMSEFFCDDAATFRLEECFKIFHNFCDKFKQAVKE 808
            ...|...||.:|:.....|..|.||..|..||::|:.:
Mouse  1148 ELGKALAFFGEDSKATTSEAFFGIFSEFMSKFERALSD 1185

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.