DRSC/TRiP Functional Genomics Resources

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Protein Alignment nab and nab1a

DIOPT Version :10

Sequence 1:NP_001014557.3 Gene:nab / 3346237 FlyBaseID:FBgn0259986 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_009294480.1 Gene:nab1a / 565795 ZFINID:ZDB-GENE-050208-574 Length:527 Species:Danio rerio


Alignment Length:375 Identity:145/375 - (38%)
Similarity:198/375 - (52%) Gaps:59/375 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 EGQRSLSGAPSASSSPIMSPQGKIFGRNANGTMITTSRPGNEAEVQLYRVLQRASLLAYYDTLLE 139
            |.:|||....|..||..:.     ..:.|...::    |.:..|:||||:||:|:||.||:..::
Zfish    12 EAERSLETPVSTGSSRALQ-----LRKRAMSVLL----PRSLGELQLYRILQKANLLCYYEAFIQ 67

  Fly   140 MGGDDVQQLYDAGEEEFLEIMALVGMASKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPP 204
            .||||||||.:||||||||||||||||:||||||||||||.:|..||.||..| :..|.:|    
Zfish    68 QGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALRDWVTNPSLFNQP-LTSLPVC---- 127

  Fly   205 KPALIFNPDTTPALPRQKFPSFNP---SGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSAP 266
                        ::|..|.|..:|   |........||.|.||.|.|      |....:|....|
Zfish   128 ------------SIPVYKLPESSPGVHSNGQQNQLVVPRALLPTSPS------PGRLDLSRDGTP 174

  Fly   267 SVPLPLVLPPNPLTSSPHPSANSNLPANTAHQVSSS------SP-QLTPVLTEAQIQRITMCADK 324
            ..        :||..:   |.:....:.:.|.:|.|      || .....|..|.:|.:..|.::
Zfish   175 GC--------SPLQGA---SESRFWGSESEHSLSPSGACSPCSPHDALDTLDSAGVQCVMECVER 228

  Fly   325 IGRQLPQREPRAQTTRKRTTRELEQVIA----MGEQDPRRMDEIRKYSAIYGRFDCKRRPEKPLT 385
            :...|.:.:|.......||.::|.::|.    |.:.||::..|||||||||||||.|||..:.||
Zfish   229 LSHTLSKSDPTEVKEHIRTNKKLSKMIGHICEMSDDDPQKEVEIRKYSAIYGRFDSKRRDGRQLT 293

  Fly   386 LHEVCVNEAAAQLCRNPQTIWLLTRRDELFPLARQIVKDAGFGHSASIAR 435
            :||:.||||:||||  .:.:.|||||||||.|||||.::..:.:|...:|
Zfish   294 MHELTVNEASAQLC--IKDLSLLTRRDELFSLARQISREVTYKYSRRSSR 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nabNP_001014557.3 NCD1 113..190 CDD:461473 53/76 (70%)
NCD2 309..435 CDD:461474 56/129 (43%)
nab1aXP_009294480.1 NCD1 40..118 CDD:461473 53/81 (65%)
NCD2 213..341 CDD:461474 56/129 (43%)
Nab1 345..526 CDD:461472
Blue background indicates that the domain is not in the aligned region.

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