DRSC/TRiP Functional Genomics Resources

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Protein Alignment nab and Nab2

DIOPT Version :9

Sequence 1:NP_001014557.3 Gene:nab / 3346237 FlyBaseID:FBgn0259986 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001128346.1 Gene:Nab2 / 314910 RGDID:1311712 Length:525 Species:Rattus norvegicus


Alignment Length:570 Identity:172/570 - (30%)
Similarity:234/570 - (41%) Gaps:188/570 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PSASSSPIMSPQGKIFGRNANGTMITTSRPGNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQL 148
            |..:.:...:||.::     ..:..|.:.|....|:|||||||||:||:||:|.::.||||||||
  Rat    13 PGRADNTRRTPQPRV-----KASASTMALPRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQL 72

  Fly   149 YDAGEEEFLEIMALVGMASKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPD 213
            .:||||||||||||||||:||||||||||||.|||.|||||..|:                    
  Rat    73 CEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPV-------------------- 117

  Fly   214 TTPALPRQKFPSF--------------NPSGSSFMPSPVPPAPLPASASVPAPTVP--LATQIS- 261
              ||:|....|.|              |..||        |.....||...:|..|  |..::| 
  Rat   118 --PAVPVSSIPLFKISETAGTRKGSMSNGHGS--------PGEKAGSARSFSPKSPLELGEKLSP 172

  Fly   262 CPSAPSVPLPLVLPPNPLTSSPH-----------------PSANSNLPANT-AHQVSSSSPQLTP 308
            .|..|....|.:.|..   |:|.                 |.|...:|..| |..|::......|
  Rat   173 LPGGPGAGDPRIWPGQ---STPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGVAAGGTGGGP 234

  Fly   309 VLTEAQIQRITM-CADKIGRQLPQREPRAQTT----RKRTTRELEQVIAMGEQDPRRMDEIRKYS 368
            ...|.::.|:.: ..::|.|..|:.:....|:    .|:..|.:..:..|.:.|.::.:||||||
  Rat   235 DRLEPEMVRMVVESVERIFRSFPRGDTGEITSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYS 299

  Fly   369 AIYGRFDCKRRPEKPLTLHEVCVNEAAAQLCRNPQTIWLLTRRDELFPLARQIVKDAGFGHSASI 433
            .||||.|.|||..|.|:|||:.:||||||.|....|  ||.||.|||.|:||:.:::.:      
  Rat   300 IIYGRLDSKRREGKQLSLHELTINEAAAQFCMRDNT--LLLRRVELFSLSRQVARESTY------ 356

  Fly   434 ARYGGLLTQLPSQGAGLGGGRAPGDTDCESSDAAVPSKRQRLSSTEAAQLPL-DLNREAVEDSRY 497
                  |:.|                           |..||.|.|....|| .|.:|..|.|  
  Rat   357 ------LSSL---------------------------KGSRLHSEELGGPPLKKLKQEVGEQS-- 386

  Fly   498 NLFAMYQKFAKPPFDLSEIAKFSVSKAADYEDNDSRFSFSNSSSPTMPTPCNGMEGERSPVSRQM 562
                 :.:..:||                                  |.|               
  Rat   387 -----HTEIQQPP----------------------------------PGP--------------- 397

  Fly   563 ETSSPP-RESVDLSGTS-SGAALSG-VQVISAAGDNIIAVANPALALSPA 609
            |..:|| |.|::....| ||.:|.| :|.:.:.         |.|...||
  Rat   398 EPYAPPYRPSLEEDSASLSGESLDGHLQAVGSC---------PRLTPPPA 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nabNP_001014557.3 NCD1 113..190 CDD:282724 59/76 (78%)
NCD2 301..435 CDD:282725 48/138 (35%)
Nab2NP_001128346.1 NCD1 37..114 CDD:282724 59/76 (78%)
NCD2 217..364 CDD:282725 55/187 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354127
Domainoid 1 1.000 126 1.000 Domainoid score I5307
eggNOG 1 0.900 - - E1_KOG3835
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 208 1.000 Inparanoid score I3612
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1002244at2759
OrthoFinder 1 1.000 - - FOG0002990
OrthoInspector 1 1.000 - - otm44740
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12623
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1985
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.860

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