DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf6 and AT1G18050

DIOPT Version :9

Sequence 1:NP_001014589.1 Gene:scaf6 / 3346235 FlyBaseID:FBgn0261872 Length:960 Species:Drosophila melanogaster
Sequence 2:NP_001319032.1 Gene:AT1G18050 / 838385 AraportID:AT1G18050 Length:224 Species:Arabidopsis thaliana


Alignment Length:61 Identity:20/61 - (32%)
Similarity:27/61 - (44%) Gaps:4/61 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE-FANYYQFRVAAEQA 64
            |||   .|...|..|..|...|||.|.........|||:.|.:..: :..|||.::|..:|
plant   147 PPR---TRYYADSSARLVFMEGPEMERKMMTSYAGNPKYSFFWSSDRYHAYYQKKLAGYRA 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaf6NP_001014589.1 Surp 13..61 CDD:280053 14/48 (29%)
CTD_bind 271..329 CDD:282648
G-patch 885..933 CDD:279867
AT1G18050NP_001319032.1 SWAP 155..203 CDD:197818 15/47 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0007
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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