DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf6 and AT5G06520

DIOPT Version :9

Sequence 1:NP_001014589.1 Gene:scaf6 / 3346235 FlyBaseID:FBgn0261872 Length:960 Species:Drosophila melanogaster
Sequence 2:NP_196270.1 Gene:AT5G06520 / 830540 AraportID:AT5G06520 Length:679 Species:Arabidopsis thaliana


Alignment Length:576 Identity:97/576 - (16%)
Similarity:170/576 - (29%) Gaps:227/576 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RNIIDKL---AEFVARNGPEFEAITKQKQQNNPKFEFLYGGEFANYYQFRVA------------- 60
            ||.:|.:   |:|||..|..|.....::...:|||:|....:....:..|:.             
plant   216 RNELDTIKLTAQFVAVYGTLFRTELMKRVFISPKFDFFKSTDSKCSFYLRLVDGYSRVLRRSRKN 280

  Fly    61 --------------AEQALLKQQAINQQLPP-------GAPSGHYMQHPP----PMQQSQPPGL- 99
                          .:|.:.|:.|:...|..       ....|..:|..|    ||..:.||.: 
plant   281 GAGLGEVVVGFLKLLDQVVEKKDAVEMALTDLHALEFFANVDGGVLQPRPEQYHPMMPTVPPLIM 345

  Fly   100 -----------YPPPNQQPP----HPPETAQDNMQQQTQHSWPPNSGNGGPPNNQQANGN----- 144
                       .|.|:..||    .||.              |.|....|..|:.:|..:     
plant   346 PQLGSQFTQLQVPQPSCSPPVRMMSPPR--------------PQNDLQSGQSNSNKAPASVAPIE 396

  Fly   145 -PMAMNLTSQLEAIKMQQKSLREQIQQSEANLS-AQHTALMNQKTKQIEDAIAAAQ-TAQQEQMA 206
             |..:....:..|:.:.:..|..:.:..|.::: |:|..:.:.........:..|: .||.:..|
plant   397 PPPEIRSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWSTDPYHAFYQLKLAEYRAQNQDRA 461

  Fly   207 GE-QGIVLRDFD-GVLQPIIESCTKDSISAGKNWILQHSTDSAKINVVLQYLLKKALVNGSTFQQ 269
            .: |..|||.|. |...|..|...|               :...|.:..|::.:    .|..|.|
plant   462 HDIQPNVLRSFGFGFEFPEKEITLK---------------ELGIIKLTAQFMAR----YGMNFVQ 507

  Fly   270 KLHLIYLVNDILHHCMRKNINDLKNSLENVVIPMFCSADLIGNPDQRQKLAKLLSLWESKAKFFD 334
            .|              ||.:                    :|||    :...|.|...|:..|::
plant   508 GL--------------RKRV--------------------VGNP----QFKFLESTNNSRFSFYN 534

  Fly   335 ACVI--SKLQSPDSSMQEYKTNLQNTHHDITAKFTQNTKATLDNYQKQHHVFIQHASQQIVQLEK 397
            ..||  |::..|...:               :|....|...:|.:            ...:||||
plant   535 GLVIAYSRVLMPSKML---------------SKSDDCTATVVDGF------------LSCLQLEK 572

  Fly   398 QAQHLEQQIV------AQKSQQQHMLQHQQKNIPSLMSHRIAMPGDHEHMNSQGPHDQQHPQAGN 456
            :.:.::..::      |:.....:     ..|:|           ..:|:::             
plant   573 REEGVDIDMIDLLDCFARLEDADY-----SANVP-----------QPQHLST------------- 608

  Fly   457 NMYPGGNFQQQQPPPGNHFADPRGPNFFIPDMSKPPPGFPGPMHHNQGPAMGQQQP 512
                     |.|||             ..|:.|.|   .|.|:.:...|.:..|.|
plant   609 ---------QMQPP-------------HTPETSPP---LPLPLKNESSPVLADQHP 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaf6NP_001014589.1 Surp 13..61 CDD:280053 13/77 (17%)
CTD_bind 271..329 CDD:282648 8/57 (14%)
G-patch 885..933 CDD:279867
AT5G06520NP_196270.1 SWAP 90..142 CDD:197818
SWAP 219..272 CDD:197818 12/52 (23%)
SWAP 402..454 CDD:197818 6/51 (12%)
Surp 489..540 CDD:280053 17/92 (18%)
UBQ 647..>679 CDD:294102
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0007
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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