DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scaf6 and Sf3a1

DIOPT Version :9

Sequence 1:NP_001014589.1 Gene:scaf6 / 3346235 FlyBaseID:FBgn0261872 Length:960 Species:Drosophila melanogaster
Sequence 2:NP_080451.4 Gene:Sf3a1 / 67465 MGIID:1914715 Length:791 Species:Mus musculus


Alignment Length:885 Identity:169/885 - (19%)
Similarity:281/885 - (31%) Gaps:329/885 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE-FANYYQFRVA------ 60
            :.||.:  :|||:||.|.|||||||||||..:|.:.|||||.||...: :..||:.:|:      
Mouse    43 IYPPPE--VRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGK 105

  Fly    61 AEQ---ALLK-----QQAINQQLPPGAPSGHYMQHPPPMQQSQPPGLYPPPNQQPPHPPETAQDN 117
            |::   |:.|     |||..||||....:       ..:|::..|...||..:....||..:..:
Mouse   106 AQEPSAAIPKVMQQQQQATQQQLPQKVQA-------QVIQETIVPKEPPPEFEFIADPPSISAFD 163

  Fly   118 MQQQTQHSWPPNSGNGGPPNNQQANGNPMAMNLTSQLEAIKMQQKSLREQIQQSEAN-----LSA 177
            :.                           .:.||:|..| :..::.|.:.:|:.:.|     |..
Mouse   164 LD---------------------------VVKLTAQFVA-RNGRQFLTQLMQKEQRNYQFDFLRP 200

  Fly   178 QHTALMNQKTKQIEDAIAAAQTAQQEQMAGEQGIVLRDFDGVLQPIIESCTKDSISAGKNWILQH 242
            || :|.|..||.:|                       .:..:|.|            .|....:.
Mouse   201 QH-SLFNYFTKLVE-----------------------QYTKILIP------------PKGLFSKL 229

  Fly   243 STDSAKINVVLQYLLKKALVNGSTFQQKLHLIYLVNDILHHCMRKNINDLKNSLENVVIPMFCSA 307
            ..::.....||..:..:  |..:.||::              .||...:.|              
Mouse   230 KKEAENPREVLDQVCYR--VEWAKFQER--------------ERKKEEEEK-------------- 264

  Fly   308 DLIGNPDQRQKLAKLLSLWESKAKFFDACVISKLQSPDSSMQEYKTNLQNTHHDITAKFTQNTKA 372
                   :::::|.....|.      |..|:..:        :::.|.|......|.......:.
Mouse   265 -------EKERVAYAQIDWH------DFVVVETV--------DFQPNEQGNFPPPTTPEELGARI 308

  Fly   373 TL-DNYQKQHHVFIQHASQQIVQLEKQAQHLEQQIVAQKSQQQHMLQHQQKNIPSLMSHRIAMPG 436
            .: :.|:|       ....:.|::|.::...:|    :|:::......|...:..:         
Mouse   309 LIQERYEK-------FGESEEVEMEVESDEEDQ----EKAEETPSQLDQDTQVQDM--------- 353

  Fly   437 DHEHMNSQGPHDQQHPQAGNNMYPGGNFQQQQPPPGNHFADPRGP--------NFFIPDMSKPPP 493
                  .:|..|::..            |:..|||......|..|        ..:.|..|||.|
Mouse   354 ------DEGSDDEEEG------------QKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLP 400

  Fly   494 GFPGPMHHNQGPAMGQQQP--------QPGQFPP------------------MQAPGSGNEPPVD 532
            ..|.|..:...|..|::.|        :.|...|                  :.|||...|..:.
Mouse   401 PAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLK 465

  Fly   533 ---------LGVLSAAIQACLQMQQQHHPDD-------------PQQQGQHQLQQQQQ------- 568
                     .||...||...:..::...|::             .||..|..:..|:|       
Mouse   466 QLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKA 530

  Fly   569 ---------------QQPQQ--QKQPPPMAAYPQNIVRPGQQNADSSEVDLDVLNAAIRAVITNK 616
                           .:|.:  |:.|||.:|          .|..||           ...||:.
Mouse   531 KGLVPEDDTKEKIGPSKPNEIPQQPPPPSSA----------TNIPSS-----------APPITSV 574

  Fly   617 PEDGTLEDGQQPQKLVDGESGEPVVIGEPQIPTAPYYDLPAGLMV----PLIRLEDYNYKALDPA 677
            |....:    .|.......|..||:   |:.|.|....||.|.::    |:|.....|...:.||
Mouse   575 PRPPAM----PPPVRTTVVSAVPVM---PRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPA 632

  Fly   678 --DIRLPAPAPQSERLTNALNAFYSAPS-------------H-DRPRDNEGWEKLGLYEYYKVKN 726
              .|..|.|.|..     ...||..||.             | ..|.::|...|       |:|.
Mouse   633 APPIMAPRPPPMI-----VPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPPSK-------KLKT 685

  Fly   727 AARKQKEEEIKDGIREKSRSPSPIVLEKPLPKKSNKRVYR 766
            ......|||.   :|   |:..|:.::..:|...:|..::
Mouse   686 EDSLMPEEEF---LR---RNKGPVSIKVQVPNMQDKTEWK 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaf6NP_001014589.1 Surp 13..61 CDD:280053 27/54 (50%)
CTD_bind 271..329 CDD:282648 5/57 (9%)
G-patch 885..933 CDD:279867
Sf3a1NP_080451.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41
SWAP 50..103 CDD:197818 28/52 (54%)
SURP motif 1 52..94 23/41 (56%)
Surp 165..215 CDD:307771 15/101 (15%)
SURP motif 2 166..208 12/43 (28%)
PRP21_like_P 232..470 CDD:315004 46/326 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 318..411 20/123 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 486..516 3/29 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 528..582 12/78 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 664..684 5/26 (19%)
Required and sufficient for nuclear import. /evidence=ECO:0000250|UniProtKB:Q15459 678..700 8/34 (24%)
SF3a120_C 716..791 CDD:176395 0/4 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0007
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.