DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf6 and cherp

DIOPT Version :9

Sequence 1:NP_001014589.1 Gene:scaf6 / 3346235 FlyBaseID:FBgn0261872 Length:960 Species:Drosophila melanogaster
Sequence 2:NP_956368.2 Gene:cherp / 337851 ZFINID:ZDB-GENE-040407-1 Length:909 Species:Danio rerio


Alignment Length:1062 Identity:351/1062 - (33%)
Similarity:495/1062 - (46%) Gaps:265/1062 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDVQ-PPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGEFANYYQFRVAAEQA 64
            ||:. ||.|..|||:|||||:||||||||||.:|.:||::|.||.||:||||..||::::|.|| 
Zfish     1 MDISTPPEDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNAKFSFLFGGEFFGYYKYKLAIEQ- 64

  Fly    65 LLKQQAINQQLPPGAPSGHYMQHPPPMQQSQPPGLYPPPNQQPPHPPETAQDNMQQQTQHSWPPN 129
                                .||                       ..|..|....:...:.|.|
Zfish    65 --------------------QQH-----------------------SGTHDDEYNMEVISNIPGN 86

  Fly   130 SGNG--------GPPNNQQANGNPMAMNLTSQLEAIKMQQKSLREQIQQSEANLSAQHTALMNQK 186
            ....        |||                   ||.....|:.|.||||:.||..|...|::.:
Zfish    87 EAADVSATMAILGPP-------------------AIPAAAPSMEELIQQSQWNLQQQEQHLLSLR 132

  Fly   187 TKQIEDAIAAAQTAQQEQMAGEQGIVLRDFDGVLQPIIESCTKDSISAGKNWILQHSTDSAKINV 251
            .:||..||:.|...|.:::..|..:.:.:.|.:|||||::||||:|||||||:..::.......:
Zfish   133 QEQITAAISLAMEQQMQKLLVETQLDMNELDNLLQPIIDTCTKDAISAGKNWMFGNAKTPQHCEL 197

  Fly   252 VLQYLLKKALVNGSTFQQKLHLIYLVNDILHHCMRKNINDLKNSLENVVIPMFCSADLIGNPDQR 316
            :..:|..:...:.:.|:.:||||||.||:||||.|||..||..:|:.||:|::|::.|....|::
Zfish   198 MASHLRNRITADEAHFELRLHLIYLTNDVLHHCQRKNQKDLLAALQKVVVPIYCTSFLSVEEDKQ 262

  Fly   317 QKLAKLLSLWESKAKFFDACVISKLQSPDSSMQEYKTNLQNTHHDITAKFTQNTKATLDNYQKQH 381
            ||:.:||.||| |..:||...|.:||||...:.:|:.:|...:..:........:..:...:.||
Zfish   263 QKITRLLQLWE-KNGYFDDVTIQQLQSPALGLGQYQASLITEYAPVVQPIQMAFQQQIQALKTQH 326

  Fly   382 HVFIQHASQQ---------IVQL-EKQAQHLEQQIVAQK-----------SQQQHMLQHQQKNIP 425
            ..|:.:.:||         :.|| ...|:...|..:|.:           |.:....|::..:  
Zfish   327 EEFVSNLNQQQTVVAAAVAVAQLTPADAEVTSQTPIASQPDLKPPLSGPPSSEYEGSQNRSSD-- 389

  Fly   426 SLMSHRIAMPGDHEHMNSQGP--HDQQHPQAGNNMYPGGNFQQ-------QQPPP----GNH--- 474
                   :.|.....|:|..|  .|.||     || |..|.||       |.|||    .:|   
Zfish   390 -------SNPALSPEMSSSKPGWFDPQH-----NM-PAWNPQQPPPFDPSQAPPPCPPWNSHEGL 441

  Fly   475 FADPRGPNFFIP-------DMSKPPPGF-------PGPMHHNQGPAMGQQQP-----QP----GQ 516
            :.:.|.||:..|       ..:.|||.:       |.....:|.|..||::|     :|    |.
Zfish   442 WNEQRDPNWSDPRDGGPWSGQNDPPPSWSGQYEQPPWSSQQDQPPPWGQREPPFRMQRPPHFRGP 506

  Fly   517 FPPMQAPGSGNEPPV--DLGVLSAAIQACLQMQQQ--------------HHPDDPQQQGQHQLQQ 565
            |||.|.|...|:||.  :.|......     ||..              ||.|.||.....::..
Zfish   507 FPPHQQPPPFNQPPPPHNFGRFPPRF-----MQDDFPPRHHFERPPYPPHHFDYPQGDFPGEIGP 566

  Fly   566 QQQQQPQQQKQPPPMAAYPQNIVRP--GQQNADSSEVDLDVLNAAIRAVITNKPEDGTLEDGQQP 628
            .....|.|:..||.::..|     |  |.|:.                  ...|..|.  :||.|
Zfish   567 PPHHHPNQRIPPPGLSDPP-----PWGGNQHE------------------FGPPPHGF--NGQAP 606

  Fly   629 QKLVDGESGEPVVIGEPQ-IPTAPYYDLPAGLMVPLIRLEDYNYKALDPADIRLPAPAPQSERLT 692
            .  :...:...|...:|. :|..||:|||||||.||::|||::||.|||.|||||.|.|.|:||.
Zfish   607 H--IRRHNPPHVSQDDPTLVPNVPYFDLPAGLMAPLVKLEDHDYKPLDPKDIRLPPPMPPSDRLL 669

  Fly   693 NALNAFYSAPSHDRPRDNEGWEKLGLYEYYKVKNAARKQKEEEIKDGIREKSRSPSPIVLEKPLP 757
            .|:.||||.|||||||::||||:.||||:::.|..||::||::                      
Zfish   670 AAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRKKEQD---------------------- 712

  Fly   758 KKSNKRVYRSKSRSRSRSKTPPH---------RDRSLSRSRSRSRSMERSLTPPPMNRSRLGGGN 813
            |:|:.|..||:|||.||.::..|         |.||.|||||||||..||       |||    :
Zfish   713 KRSSARWSRSRSRSHSRGRSSSHSSSRSSKSSRSRSRSRSRSRSRSYSRS-------RSR----S 766

  Fly   814 NRKGRNRSPRHERDNNSGSTNTREGRGDRGNSNSRDNGNSTNLR-RVDRDRSLTPPSFLG---ST 874
            ..:.|:||                  |.|..|.||....|...| ...:.||.||||..|   |:
Zfish   767 QSRSRSRS------------------GSRSRSKSRSRSRSPEKRPHATKSRSPTPPSTSGLGSSS 813

  Fly   875 FAKPADF-IEESNKGHQMLMKMGWAGTGTGLGSKNQGIDTPISGGEVRDRREMYKGVGANMHDPF 938
            .|.|.|. :.|.||||||||||||:|:| |||:|.|||..||.||::||:.:.|||||..:.||:
Zfish   814 AAIPPDLRLGEENKGHQMLMKMGWSGSG-GLGAKEQGIQDPIKGGDIRDKWDQYKGVGVALDDPY 877

  Fly   939 ESFRKNKGAAFAHRMRSRDDKS 960
            .::|:||...|..||::|:..|
Zfish   878 VNYRRNKSYNFVARMKAREKVS 899

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaf6NP_001014589.1 Surp 13..61 CDD:280053 30/47 (64%)
CTD_bind 271..329 CDD:282648 31/57 (54%)
G-patch 885..933 CDD:279867 32/47 (68%)
cherpNP_956368.2 SURP motif 13..65 34/72 (47%)
SWAP 13..65 CDD:197818 34/72 (47%)
RPR domain 123..291 67/168 (40%)
CTD_bind 217..276 CDD:282648 32/59 (54%)
RS domain 714..788 35/102 (34%)
G-patch 822..872 33/50 (66%)
G_patch 822..872 CDD:197727 33/50 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596506
Domainoid 1 1.000 183 1.000 Domainoid score I3375
eggNOG 1 0.900 - - E1_KOG4368
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 465 1.000 Inparanoid score I1518
OMA 1 1.010 - - QHG48532
OrthoDB 1 1.010 - - D1256232at2759
OrthoFinder 1 1.000 - - FOG0006072
OrthoInspector 1 1.000 - - oto40953
orthoMCL 1 0.900 - - OOG6_108174
Panther 1 1.100 - - LDO PTHR12323
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4367
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.860

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