DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr2 and sdk1a

DIOPT Version :9

Sequence 1:NP_001014480.4 Gene:dpr2 / 3346227 FlyBaseID:FBgn0261871 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_009297968.1 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2245 Species:Danio rerio


Alignment Length:263 Identity:66/263 - (25%)
Similarity:101/263 - (38%) Gaps:51/263 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 EAEEQPPEETTYPPPVFDFGMPRNITTRTGHTAAINCRVDNLGDKSVSWIRKRDLHILTAGILTY 156
            ||:.....:.|...|.|. ..|.:||...|..||..|||......::.|  :||..||.:|.:..
Zfish   496 EAQVHTYLDVTSMAPAFT-APPLDITVTDGAVAAFTCRVSGAPKPAIVW--RRDTQILASGSVQI 557

  Fly   157 TSDERFKVVRTADSKDWTLHVKYAQPRDSGIYEC-QVNTEPKISMAFRLNVIVTPPDAKAIIAGP 220
               .||.::.:..     |.::....:|:|.|.| ..|:|..|:.:..|.|.    ...:|.:.|
Zfish   558 ---PRFTLLESGG-----LQIQPVVLQDTGNYTCYAANSEGAINASASLTVW----SRTSISSPP 610

  Fly   221 TDLYVKVGSSVTLTCHVKQPATSAQDIGPIY-WYRGPYILTPFVAHPNDAAIDLQRISMESTLAE 284
            ||..|..|::..|.|    .||....:|..| |.:...:    |:|.....|.||          
Zfish   611 TDRRVIKGTTAILEC----GATHDPRVGVRYVWKKDEEL----VSHSRGGRISLQ---------- 657

  Fly   285 KLQSRLRIANAQLLDTGNYTCMPTTAEAASVVVNVINDESPAAMQ------KSRAIRTSGSMRSS 343
              :..|.|:.....|.|||||        .|:....|:...|.::      ..|.::.|.:...|
Zfish   658 --EGSLHISQTWSGDIGNYTC--------DVISEAGNESKEARLEVIELPHSPRNLQASLNANDS 712

  Fly   344 RLV 346
            |.|
Zfish   713 RSV 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr2NP_001014480.4 IG_like 113..206 CDD:214653 26/93 (28%)
Ig 116..192 CDD:299845 21/76 (28%)
ig 220..306 CDD:278476 24/86 (28%)
IG_like 220..306 CDD:214653 24/86 (28%)
sdk1aXP_009297968.1 I-set 125..208 CDD:254352
Ig 125..204 CDD:299845
IG_like 222..302 CDD:214653
Ig 236..287 CDD:299845
Ig_3 322..394 CDD:290638
I-set 323..412 CDD:254352
I-set 416..505 CDD:254352 2/8 (25%)
Ig 436..500 CDD:299845 2/3 (67%)
I-set 510..600 CDD:254352 28/100 (28%)
Ig 527..600 CDD:299845 22/82 (27%)
I-set 605..693 CDD:254352 29/115 (25%)
Ig 610..693 CDD:299845 28/110 (25%)
FN3 697..788 CDD:238020 5/19 (26%)
fn3 800..886 CDD:278470
FN3 901..997 CDD:238020
FN3 1002..1090 CDD:238020
FN3 1100..1196 CDD:238020
FN3 1206..1301 CDD:238020
FN3 1308..1397 CDD:238020
FN3 1408..1501 CDD:238020
FN3 1507..1602 CDD:238020
FN3 1616..1722 CDD:238020
FN3 1732..1825 CDD:238020
FN3 1830..1919 CDD:238020
FN3 1931..2021 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.