DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr2 and Lsamp

DIOPT Version :9

Sequence 1:NP_001014480.4 Gene:dpr2 / 3346227 FlyBaseID:FBgn0261871 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr2NP_001014480.4 IG_like 113..206 CDD:214653
Ig 116..192 CDD:299845
ig 220..306 CDD:278476
IG_like 220..306 CDD:214653
LsampXP_038944182.1 Ig 55..145 CDD:416386
FR1 55..71 CDD:409353
Ig strand A' 56..62 CDD:409353
Ig strand B 64..72 CDD:409353
CDR1 72..76 CDD:409353
FR2 77..84 CDD:409353
Ig strand C 77..83 CDD:409353
CDR2 85..95 CDD:409353
Ig strand C' 87..90 CDD:409353
Ig strand C' 92..95 CDD:409353
FR3 96..131 CDD:409353
Ig strand D 100..107 CDD:409353
Ig strand E 110..116 CDD:409353
Ig strand F 123..131 CDD:409353
CDR3 132..136 CDD:409353
Ig strand G 136..145 CDD:409353
FR4 138..145 CDD:409353
Ig_3 148..218 CDD:404760
Ig strand A' 155..160 CDD:409353
Ig strand B 166..173 CDD:409353
Ig strand C 179..184 CDD:409353
Ig strand D 190..193 CDD:409353
Ig strand E 197..203 CDD:409353
Ig strand F 210..217 CDD:409353
Ig strand G 224..232 CDD:409353
Ig_3 235..311 CDD:404760
Ig strand B 252..256 CDD:409353
Ig strand C 265..269 CDD:409353
Ig strand E 290..294 CDD:409353
Ig strand F 304..309 CDD:409353
Ig strand G 318..321 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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