DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ppk13 and scnn1a

DIOPT Version :9

Sequence 1:NP_001014495.1 Gene:ppk13 / 3346226 FlyBaseID:FBgn0053508 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_001184124.1 Gene:scnn1a / 395013 XenbaseID:XB-GENE-996083 Length:633 Species:Xenopus tropicalis


Alignment Length:547 Identity:100/547 - (18%)
Similarity:186/547 - (34%) Gaps:156/547 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FSRVIEEYLKNSTLHGARFIVDKDASWIERIFWVICLVASWYASWLLIKASLSAFENNAISFVVE 67
            :..:.|.:..|:|:|||..:|...::.::..||::..:|::...:.........:.:..:|.   
 Frog    19 YRELFEFFCSNTTIHGAIRLVCSRSNRMKTAFWLVLFLATFGLMYWQFGLLFGQYFSYPVSI--- 80

  Fly    68 SSFRDWNTN-----FPAIIVCESKNMDRIQEVAEQLWGADHDFTLEEVLSEIAFFR--------- 118
                :.|.|     |||:.|| :.|..|.:.:...|...|.:  .:..|.|:..:.         
 Frog    81 ----NLNVNSDKLPFPAVTVC-TLNPYRYKAIQNDLQELDKE--TQRTLYELYKYNSTGVQGWIP 138

  Fly   119 ---------------------GESYHTVHE--------------------CSGEEVTASCFYSNF 142
                                 |...|.|..                    |:  |....|||..:
 Frog   139 TNQRVRRDRPGLPHLLELVPPGSKTHRVSRSVIEEELQVKRREWNIGFKLCN--ETGGDCFYQTY 201

  Fly   143 SYYAELVR----------------SSCVDS------ISNCEWNNKPFECCKYFHRMETELGICYA 185
            :...:.:|                .:.:|.      |..|.:|.:......|.|......|.||.
 Frog   202 TSGVDAIREWYRFHYINILARVPEEAAIDGEQLENFIFACRFNEESCTKANYSHFHHAIYGNCYT 266

  Fly   186 INSMQAGKPKMPKLNMYSNRGSGPG---ALKMELHTE-------------ATVFILGTEEVPTLV 234
            .|..::|:.     |::|:  |.||   .|.:.|.||             |.|.:.|.:| |..:
 Frog   267 FNQNRSGQS-----NLWSS--SMPGIKNGLTLILRTEQHDYIPLLSSVAGARVLVHGHKE-PAFM 323

  Fly   235 TPKTDFLVVGPYISFVRYISKRDIENDEEIRQTSVHQRNCRFAD--ENILDV------HKFYSYS 291
            ......:..|             :|....:::.:|::...:::|  |:..||      ...|:..
 Frog   324 DDSGFNIPPG-------------METSIGMKKETVNRMGGKYSDCSEDGSDVDVKNLFESEYTEQ 375

  Fly   292 ACTVQCRKDRQMELCNCSSHLSPNSPDWQLCNMEGLECLNRNYEDLSVIIAKWSKLRGRKGLVCD 356
            .|...|.:...:|.|.|.....|.||..:.|:....:.....|..| :|....:||    |....
 Frog   376 VCVRSCFQAAMVERCGCGYAFYPLSPGDEFCDYNKHKSWGHCYYKL-IIEFTSNKL----GCFSK 435

  Fly   357 CLPSC--TEVDITTVYD---------------SKENMAGSQNAISRIEVGLIELPTERYKRNLVR 404
            |...|  :|..:|..|.               |::.....:|.|:::.:...||..:..:.:...
 Frog   436 CRKPCLVSEYQLTAGYSKWPNRVSQDWVFHTLSRQYNLTDRNGIAKLNIYFEELNYKTIQESPTI 500

  Fly   405 GKLDLVVSIGGTTGLFVGASLLSFVEI 431
            ..:.|:..:|....|:.|:|:||.||:
 Frog   501 NMVMLLSLLGSQWSLWFGSSVLSVVEM 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppk13NP_001014495.1 ASC 10..434 CDD:279230 99/540 (18%)
scnn1aNP_001184124.1 ENaC 18..602 CDD:273304 100/547 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.