DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ppk13 and Scnn1b

DIOPT Version :9

Sequence 1:NP_001014495.1 Gene:ppk13 / 3346226 FlyBaseID:FBgn0053508 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_036780.1 Gene:Scnn1b / 24767 RGDID:3640 Length:638 Species:Rattus norvegicus


Alignment Length:613 Identity:111/613 - (18%)
Similarity:183/613 - (29%) Gaps:238/613 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FSRVIEEYLKNSTLHGARFIV----DKDASWIERIFWVICLVA-SW------YASWLLIKASLSA 56
            :..::..|..|:..||.:.|:    .|.|.|........|||. .|      |.||         
  Rat    22 YKELLVWYCNNTNTHGPKRIICEGPKKKAMWFLLTLLFACLVCWQWGVFIQTYLSW--------- 77

  Fly    57 FENNAISFVVESSFRDWNTNFPAIIVCES------------KNMDRIQEVAEQ------------ 97
                .:|..:...|:  ..||||:.||.|            |::.::.|....            
  Rat    78 ----EVSVSLSMGFK--TMNFPAVTVCNSSPFQYSKVKHLLKDLYKLMEAVLDKILAPKSSHTNT 136

  Fly    98 -------LW-----------GADHDFTLEEVLSEIAFFRGESYHTVHECSGEEVTAS-------- 136
                   :|           ..||...|.        ..|:|:::.:...|....|.        
  Rat   137 TSTLNFTIWNHTPLVLIDERNPDHPVVLN--------LFGDSHNSSNPAPGSTCNAQGCKVAMRL 193

  Fly   137 -------CFYSNFSYYAELVRSSCVDSISN-----------------------CEWNNKPFECCK 171
                   |.:.||:...:.|....:...:|                       |.:..:|   |.
  Rat   194 CSANGTVCTFRNFTSATQAVTEWYILQATNIFSQVLPQDLVGMGYAPDRIILACLFGTEP---CS 255

  Fly   172 YFHRMET-----ELGICYAINSMQAGKPKMPKLNMYSNRG-----------------SGPGALKM 214
              ||..|     :.|.||..|.....| .:|..|..:..|                 |..|| ::
  Rat   256 --HRNFTPIFYPDYGNCYIFNWGMTEK-ALPSANPGTEFGLKLILDIGQEDYVPFLASTAGA-RL 316

  Fly   215 ELHTEATVFILGTEEVPTLVTPKTDFLVV--------GPYISFVRYISKRDIENDEEIRQTSVHQ 271
            .||.:.|...:..|.:..:...:|...|:        .||.......|...|:|           
  Rat   317 MLHEQRTYPFIREEGIYAMAGTETSIGVLLDKLQGKGEPYSPCTMNGSDVAIQN----------- 370

  Fly   272 RNCRFADENILDVHKFYSYSACTVQCRKDRQMELCNCSSHLSP-----------NSPDWQLC--- 322
               .::|.|..     ||..||...|.:|..:..|:|..:|.|           :.|||..|   
  Rat   371 ---LYSDYNTT-----YSIQACLHSCFQDHMIHNCSCGHYLYPLPAGEKYCNNRDFPDWAYCYLS 427

  Fly   323 ------------NMEGLECLNRNYEDLSVIIAKWSKLRGRKGLVCDCLPSCTEVD-----ITTVY 370
                        :|....|.:..|: :::.:|.|              ||....|     ::...
  Rat   428 LQMSVVQRETCLSMCKESCNDTQYK-MTISMADW--------------PSEASEDWILHVLSQER 477

  Fly   371 DSKENMAGSQNAISRIEVGLIELPTERYKRNLVRGKLDLVVSIGGTTGLFVGASLLSFVEI---- 431
            |...|:..|:..|.::.:...|......:.:.....:.|:.::||..|.::|.|:|..:|.    
  Rat   478 DQSSNITLSRKGIVKLNIYFQEFNYRTIEESPANNIVWLLSNLGGQFGFWMGGSVLCLIEFGEII 542

  Fly   432 --FYYITI----------------RPYT 441
              |.:||:                ||||
  Rat   543 IDFIWITVIKLVASCKGLRRRRPQRPYT 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppk13NP_001014495.1 ASC 10..434 CDD:279230 105/581 (18%)
Scnn1bNP_036780.1 ENaC 21..621 CDD:273304 111/613 (18%)
deg-1 29..538 CDD:273309 103/572 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 598..620
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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