DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG33552 and rnf4

DIOPT Version :9

Sequence 1:NP_001014488.1 Gene:CG33552 / 3346220 FlyBaseID:FBgn0053552 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001016554.1 Gene:rnf4 / 549308 XenbaseID:XB-GENE-1016982 Length:188 Species:Xenopus tropicalis


Alignment Length:140 Identity:32/140 - (22%)
Similarity:61/140 - (43%) Gaps:15/140 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DITKMTKKKLIVEVIKQRKRNKEKDEIIKDSFESKKRL-------IDLRLQLDKEKNITKELRLR 62
            |:|..:.:.::|::........:...|::|:...::.|       ....|..|.|.:...:   .
 Frog    45 DLTCESTEPVVVDLTNNDLSINDSVVIVEDTPRQRRALSRPSQQTTSCVLSSDDEDSRHAD---H 106

  Fly    63 LAAQDAIANQAENLSMKRKKIAEENKCYICKWNYE--VTGDHRPVSIKCGHLFGANCILHYLQRN 125
            .||...|::||...|   :..:.:..|.||..:|.  |......||.||||:|.:.|:...|:..
 Frog   107 FAANKDISSQAYGSS---RSSSGKVSCPICMDSYSEIVQSGRLIVSTKCGHIFCSQCLRDALKNA 168

  Fly   126 KTCPICKSQM 135
            .:||.|:.::
 Frog   169 PSCPTCRKKL 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33552NP_001014488.1 zf-RING_2 87..132 CDD:290367 16/46 (35%)
rnf4NP_001016554.1 zf-RING_2 129..175 CDD:290367 16/45 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001208
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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