DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ddr and ntrk3b

DIOPT Version :10

Sequence 1:NP_001014474.3 Gene:Ddr / 3346209 FlyBaseID:FBgn0053531 Length:1054 Species:Drosophila melanogaster
Sequence 2:XP_002662799.4 Gene:ntrk3b / 798577 ZFINID:ZDB-GENE-010126-4 Length:818 Species:Danio rerio


Alignment Length:798 Identity:185/798 - (23%)
Similarity:300/798 - (37%) Gaps:293/798 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 NFRADINGLGKGYEWIGWRNDTLLGRPVEIIFEFETVRNLSAVIIHTNNMF-------------- 365
            |.....||.|.....:.|                 .|:.|.::..|.:.::              
Zfish   225 NVTLSCNGSGSPVPEVDW-----------------AVKGLHSINTHQSTVYLPNTHSINLTLVNV 272

  Fly   366 SKDVQVFVHAKVFFSIGGRHFSGEPVQFSYM-PDLVLDHARDVTIKLHHRLGRYV-------QLH 422
            |:|...||...:..::.|  .:...:|.|.: |.::|  ..|...:.||....:.       .||
Zfish   273 SRDDNGFVLTCISENVVG--MNNVSLQLSVLFPPVIL--KLDEPERRHHTCIEFTVRGFPHPTLH 333

  Fly   423 LYFAARWMMISE----------------ITF---------------------ISAPVVGNFTDEL 450
            .::..|.::.||                :||                     :|..|.|:|.|. 
Zfish   334 WFYKGREILQSEYIRMEMDYYKDYLEGCLTFENPTHYDNGNYTLVATNSLGSVSKTVFGHFLDP- 397

  Fly   451 ANGEKQSVTSEYPLQRDEVGRAISSGGERSQHTTQVISPKPIDH-QEPETSF-VGVIITVLG-TI 512
                        |...|:              .....:|.|.|. :.||.|| :.:.:.:.| ..
Zfish   398 ------------PFMEDD--------------GIMEYTPPPEDEGKRPEDSFGMSIAVGLAGFGC 436

  Fly   513 IMLLVAFILLIVARNKHVRSRENGLDAFQHNFSPDTLNGNGVLKVVTTMDDNESSIDKNSLYHEP 577
            :.|:|.|:|:    ||:.|..:.|:              .|.:.|::..:|              
Zfish   437 VFLIVIFVLI----NKYSRRNKFGI--------------KGPVAVISGEED-------------- 469

  Fly   578 FNANMYTSAASACPMNDLQRQHVSPDYTDVPDIVCQDYAVPHMQQLLPNAPPCGSGCGTGTGTGP 642
                      ||.|::.:....|:|                               |....|   
Zfish   470 ----------SASPLHHVNHGIVTP-------------------------------CSLDAG--- 490

  Fly   643 GRGSSPEFVVATGKVTASARNSLNAATLPLPSPPVPPPLEKYYAATPVSSKPMPVAPPGSQSSGS 707
                 |:.||            :..:.:|:...|      :|:.                     
Zfish   491 -----PDAVV------------IGMSRIPVIENP------QYFR--------------------- 511

  Fly   708 LSSSTTAATTPTSGVVGVGKPHHYNLDMSANFADINEERANCQVQEFPRQSLVIVEKLGSGVFGE 772
                                 |.:|.:....:           ||...|:.:|:..:||.|.||:
Zfish   512 ---------------------HGHNCNKPTTY-----------VQHIKRRDIVLKRELGEGAFGK 544

  Fly   773 LHLCETNVLNAT----LVAVATLR-PGANDHLRKEFRSKAKQLAQLSDPNVARLVGACLRDEPIC 832
            :.|.|...|:.|    ||||.||: |...  .||:|:.:|:.|..|...::.:..|.|:..:|:.
Zfish   545 VFLAECYNLSPTKDKMLVAVKTLKDPTLT--ARKDFQREAELLTNLQHEHIVKFYGVCVDGDPLI 607

  Fly   833 IVQDY-SHCLGDLNQFLQEH------VAETSGLMAKKSLSFGCLVYIATQIASGMKHLEQMNFVH 890
            :|.:| .|  ||||:||:.|      :.:...:.:...|....:::||||||:||.:|...:|||
Zfish   608 MVFEYMKH--GDLNKFLRAHGPDAMILVDGQPMQSNGELGLSQMLHIATQIAAGMVYLSSQHFVH 670

  Fly   891 RDLATRSCIIGPELCVKVCSIGTVINRSAYASDYCQLEGFTGRQSQPMPIRWMAWESVLLGKFTT 955
            ||||||:|::|..|.||:...|  ::|..|:|||.::.|.|     .:|||||..||::..||:|
Zfish   671 RDLATRNCLVGNGLLVKIGDFG--MSRDIYSSDYYRVGGHT-----MLPIRWMPPESIMYRKFST 728

  Fly   956 KSDVWSFAVALWEILTFAREQPYEHLSDKSVIENIGLIYRDYKMHELLPMPPNCPREIYDLMCEC 1020
            :||||||.|.:|||.|:.: ||:.|||:..|||.|       ....:|..|..||:|:||||..|
Zfish   729 ESDVWSFGVIMWEIFTYGK-QPWFHLSNNEVIECI-------TQGRVLDRPRLCPKEVYDLMLGC 785

  Fly  1021 WQRDESSRPSFREIHLYL 1038
            |||:...|.:.::|...|
Zfish   786 WQREPQQRLNIKDIQKVL 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DdrNP_001014474.3 FA58C 109..261 CDD:238014
PTKc_DDR 753..1040 CDD:270644 115/298 (39%)
ntrk3bXP_002662799.4 LRR_8 103..159 CDD:404697
leucine-rich repeat 105..128 CDD:275378
leucine-rich repeat 129..151 CDD:275378
LRRCT_2 164..207 CDD:465313
ig 213..298 CDD:395002 13/91 (14%)
Ig strand B 226..230 CDD:409405 0/3 (0%)
Ig strand C 239..249 CDD:409405 3/26 (12%)
Ig strand E 265..269 CDD:409405 0/3 (0%)
Ig strand F 279..285 CDD:409405 2/5 (40%)
Ig strand G 293..296 CDD:409405 0/2 (0%)
IgI_TrKABC_d5 303..395 CDD:409360 15/93 (16%)
Ig strand A 304..310 CDD:409360 1/7 (14%)
Ig strand A' 312..315 CDD:409360 0/2 (0%)
Ig strand B 318..326 CDD:409360 0/7 (0%)
Ig strand C 329..336 CDD:409360 2/6 (33%)
Ig strand C' 339..342 CDD:409360 1/2 (50%)
Ig strand D 347..353 CDD:409360 0/5 (0%)
Ig strand E 357..365 CDD:409360 1/7 (14%)
Ig strand F 373..381 CDD:409360 0/7 (0%)
Ig strand G 384..392 CDD:409360 2/7 (29%)
PTKc_TrkC 525..811 CDD:270676 115/298 (39%)
Blue background indicates that the domain is not in the aligned region.

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