DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ddr and Eph

DIOPT Version :9

Sequence 1:NP_001014474.3 Gene:Ddr / 3346209 FlyBaseID:FBgn0053531 Length:1054 Species:Drosophila melanogaster
Sequence 2:NP_524625.3 Gene:Eph / 43803 FlyBaseID:FBgn0025936 Length:1096 Species:Drosophila melanogaster


Alignment Length:1021 Identity:238/1021 - (23%)
Similarity:388/1021 - (38%) Gaps:268/1021 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 NGGAWCPKHMVSRGLTEYLQVDLLGVHLVSAIRTQGRFGKGQGQEYTEAYVIEY----------- 198
            |...|.|  .:.||....|.::     :...||....| .|......|.:.:.:           
  Fly   140 NNWLWSP--FIDRGSANRLYIE-----IQFTIRDCSLF-PGNALSCKETFSLLFYEFDAATREPP 196

  Fly   199 -WRPGLKKWIRWRSLQGKEVLPGNINTYSEVE-NVLQPSVFASKVRLYPYSQYDRTVCL-----R 256
             |:....:.|. |...|:    |..|..|:|: |....|:..:|..:| ::..|:..|:     :
  Fly   197 PWQTDSYRLIA-RIAAGE----GRFNQNSDVDINTEVKSIAVNKKGVY-FAFRDQGACISVLAVK 255

  Fly   257 AEIVGC-AWEEGIVSYS-IPKG-------MQRGMDIDLSDKTYDGYEEGDHYVNGLGQ---LVDG 309
            ...:.| |..|....:: .|.|       .|.|..:|.::.    ||...:...|.|:   |..|
  Fly   256 VYYITCPAVTENFAHFNETPTGREITIIEKQNGTCVDNAEP----YETPTYLCKGDGKWTILTGG 316

  Fly   310 QRGKDNFRADINGLGKGYEWIGWRNDTLLGRPVEIIFEFETVR------NLSAVIIHTNNMFSKD 368
            .|.|           .||| ..:.|.|....|:......|..:      |.:|  ..|.:.|.|.
  Fly   317 CRCK-----------AGYE-PNYTNKTCTECPLGTFKSPEVTKCTPCPPNSNA--SKTGSPFCKC 367

  Fly   369 VQVFV-HAKVFFSIGGRHFS--GEPVQFSYMPDLVLDH----------------ARDVTIKLHHR 414
            ...|. |..     .|||..  ..|...:.:..|.:|.                :.:...|::| 
  Fly   368 ASGFYRHPN-----DGRHMPCYSPPAAPTNLTLLFVDQTSAIISWSAPAKNESFSSETNSKIYH- 426

  Fly   415 LGRYVQLHLYFAARWMMISEITF-----ISAP-VVGNFTDELANGEKQSVTSEYPLQRDEVG--- 470
                              |:|.:     |.:| ||.|.:.:..|..|.::|:..|:....|.   
  Fly   427 ------------------SDIVYKIKCNICSPNVVYNPSTDTFNETKITLTNLEPVTTYTVQIHA 473

  Fly   471 -RAISSGGERSQHTTQ---------VISPK-----PIDHQEPETSFVGVIITVLGTIIMLLVAFI 520
             .::|...|..:|:.:         |.|..     |:|..|.:|....::.|.  ..::|...|.
  Fly   474 INSVSHINEFKRHSNESSLVAVSDIVFSNTSLLNIPLDLNEVKTGQAEIVFTT--ESVLLSTVFN 536

  Fly   521 LLIVA---------RNKHVRSRENGLDAFQHNFSP----DTLNGNGV------LKVVTTMDDNES 566
            |.|:|         .:|.|:| :..|:.::..:.|    |.:|.:.:      ..:|..:::.|.
  Fly   537 LRILAITNKDADLEWDKPVQS-DFPLEFYEVRWFPKVELDAINKSALNTKETKAHIVGLLENTEY 600

  Fly   567 SIDKNSLYHEPFNANMYTSAASACPMNDLQRQHVSPDYTDVPDIVCQDYAVPHMQQLLPNAPPCG 631
            ........:..|.:  |::...|..:     |.|...|.|...|.....|:......|       
  Fly   601 GFQVRCKTNNGFGS--YSNMIYAQTL-----QSVGSVYDDSVQIRFIAGAIVTGVLFL------- 651

  Fly   632 SGCGTGTGTGPGRGSSPEFVVATGKVTASA------RNSLNAATLPLPSPPVPPPLEKYYAATPV 690
                            ..|::||.....|.      :.|.|...|||.           ||:..|
  Fly   652 ----------------VIFIIATVYFMRSKHQDDLDKKSTNHLPLPLD-----------YASNEV 689

  Fly   691 SSKPMPVAPPGSQSSGSLSSSTTAATTPTSG-VVGVGKPHHYNLDMSANFADINEERANCQVQEF 754
            :|  |...|       .:.......|||..| ......||.|             |..|..::||
  Fly   690 NS--MDTTP-------IVKKLHLNVTTPLFGNSRSYVDPHTY-------------EDPNQAIREF 732

  Fly   755 PRQ---SLVIVEK-LGSGVFGELHLCE------TNVLNATLVAVATLRPGANDHLRKEFRSKAKQ 809
            .|:   :.:.:|. :|.|.||:  :|.      .|.:....||:.||:||:::..|.:|.::|..
  Fly   733 AREIDANYITIEAIIGGGEFGD--VCRGRLKIPPNFVQDIDVAIKTLKPGSSEKARCDFLTEASI 795

  Fly   810 LAQLSDPNVARLVGACLRDEPICIVQDYSHCLGDLNQFLQEHVAETSGLMAKKSLSFGCLVYIAT 874
            :.|...|||..|.|...|..|:.|:.:|.. .|.|:.||:.:..:...|.         |:.:..
  Fly   796 MGQFDHPNVIYLQGVVTRSNPVMIITEYME-NGSLDTFLRVNDGKFQTLQ---------LIVMLR 850

  Fly   875 QIASGMKHLEQMNFVHRDLATRSCIIGPELCVKVCSIGTVINRS-AYASDYCQLEGFTGRQSQPM 938
            .|||||.:|..||:||||||.|:.::..:|..|:...|  ::|. ..|||     .:|.|..: :
  Fly   851 GIASGMSYLSDMNYVHRDLAARNVLVNAQLICKIADFG--LSREIENASD-----AYTTRGGK-I 907

  Fly   939 PIRWMAWESVLLGKFTTKSDVWSFAVALWEILTFAREQPYEHLSDKSVIENIGLIYRDYKMHELL 1003
            |:||.|.|::...|||:.|||||:.|.|||::::. |:||.:.|::.||::|...||       |
  Fly   908 PVRWTAPEAIAFRKFTSASDVWSYGVVLWEVMSYG-ERPYWNWSNQDVIKSIEKGYR-------L 964

  Fly  1004 PMPPNCPREIYDLMCECWQRDESSRPSFREIHLYLQRKNLGFKPQT 1049
            |.|.:||..:|.||.:|||:..:.||:|..|...|.  ||..:||:
  Fly   965 PAPMDCPEALYQLMLDCWQKQRTHRPTFASIVSTLD--NLARQPQS 1008

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DdrNP_001014474.3 FA58C 106..262 CDD:214572 25/134 (19%)
FA58C 109..261 CDD:238014 25/133 (19%)
PTKc_DDR 753..1040 CDD:270644 101/297 (34%)
TyrKc 759..1038 CDD:197581 97/286 (34%)
EphNP_524625.3 EphR_LBD 85..260 CDD:198439 25/133 (19%)
FN3 387..476 CDD:238020 17/107 (16%)
FN3 536..623 CDD:238020 15/89 (17%)
EphA2_TM 644..736 CDD:291255 28/147 (19%)
PTKc_EphR 736..1002 CDD:270629 98/295 (33%)
Pkinase_Tyr 741..999 CDD:285015 97/285 (34%)
SAM_1 1033..1092 CDD:278937
SAM 1039..1092 CDD:197735
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45455259
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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