DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ddr and ephb4b

DIOPT Version :10

Sequence 1:NP_001014474.3 Gene:Ddr / 3346209 FlyBaseID:FBgn0053531 Length:1054 Species:Drosophila melanogaster
Sequence 2:NP_571492.1 Gene:ephb4b / 30691 ZFINID:ZDB-GENE-990415-65 Length:976 Species:Danio rerio


Alignment Length:615 Identity:154/615 - (25%)
Similarity:240/615 - (39%) Gaps:183/615 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   577 PFNANMYTSAASACPMNDLQRQHVSPDY----TDVPDIVCQD---------YAVPHMQQLLPNAP 628
            |.|:|.:::.:|.|...        |.|    :|:||..|..         |.:......|..:.
Zfish   292 PDNSNTHSAGSSLCVCR--------PGYHRATSDLPDSACTKPPSAPRSIIYQINDTVVTLEWSE 348

  Fly   629 PCGSG---------------------CGTGTGTGPGR-GSSPEFVVATGKV-------------- 657
            |...|                     |.......||: |.|...|:..|.:              
Zfish   349 PLDRGGRSDLSYSVECMHCRGSLCVQCADSITYRPGQMGVSGRRVIIRGLLPHTTYTFTVLAQNG 413

  Fly   658 ------TASARNSLNAAT-----LPLP--------------SPPVPPPLE--------KY----- 684
                  |:.|.:|:|..|     :|:.              |..|||..:        :|     
Zfish   414 VSAVSHTSPASSSVNITTSRDVAVPVSGIRRIKASESSVSISWTVPPQTQHSIQDYQLRYSLKGQ 478

  Fly   685 -----YAATPVSSKPMPVAPPGSQ-----------SSGSLSSSTTAATTP-----------TSGV 722
                 |.::..||..:......||           ..|..||:.:.:|.|           |..:
Zfish   479 DDGWQYVSSRSSSVVLNDLSRASQYQVQVRARTAAGYGHFSSAVSISTLPDDEESPSRLMLTGVL 543

  Fly   723 VGVG-------------------KPHHYNLDMSANFA----------DINEERANCQVQEFPRQ- 757
            |.:|                   :....:.|.|..|.          ....|..|..|:||.:: 
Zfish   544 VAIGLLILIAVVIVAVFCFRRSTRRRDPDPDKSGQFLMGQGIKVYIDPFTYEDPNEAVREFAKEI 608

  Fly   758 --SLVIVEK-LGSGVFGELHLCETNV----LNATLVAVATLRPGANDHLRKEFRSKAKQLAQLSD 815
              |.|.:|: :|:|.|||  :|...:    .....||:.||:.|..|..|::|.|:|..:.|...
Zfish   609 DVSFVKIEEVIGAGEFGE--VCRGRLKVPGKKENYVAIKTLKGGYTDKQRRDFLSEASIMGQFQH 671

  Fly   816 PNVARLVGACLRDEPICIVQDYSHCLGDLNQFLQEHVAETSGLMAKKSLSFGCLVYIATQIASGM 880
            ||:..|.|......|:.|:.:|.. .|.|:.||:.:..:.:.:.         ||.:...|||||
Zfish   672 PNIIHLEGVITASCPVMILTEYME-NGALDSFLRLNDGQFTPIQ---------LVGMLRGIASGM 726

  Fly   881 KHLEQMNFVHRDLATRSCIIGPELCVKVCSIGTVINRSAYASDYCQLEGFTGRQSQPMPIRWMAW 945
            |:|.:|:|||||||.|:.::...|..||...|.    |.:.::......:|......:||||.|.
Zfish   727 KYLSEMSFVHRDLAARNILVNSNLVCKVSDFGL----SRFLTENSSDPTYTSSLGGKIPIRWTAP 787

  Fly   946 ESVLLGKFTTKSDVWSFAVALWEILTFAREQPYEHLSDKSVIENIGLIYRDYKMHELLPMPPNCP 1010
            |::...|||:.|||||:.:.:||:::|. |:||..:|::.|   |..|.:||:    ||.||.||
Zfish   788 EAIAFRKFTSASDVWSYGIVMWEVMSFG-ERPYWDMSNQDV---INAIEQDYR----LPPPPECP 844

  Fly  1011 REIYDLMCECWQRDESSRPSFREIHLYLQR 1040
            ..::.||.:|||::.||||.|..|...|.|
Zfish   845 ASLHQLMLDCWQKERSSRPRFCAIVSALDR 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DdrNP_001014474.3 FA58C 109..261 CDD:238014
PTKc_DDR 753..1040 CDD:270644 101/294 (34%)
ephb4bNP_571492.1 EphR_LBD 25..198 CDD:470656
FN3 327..431 CDD:238020 15/103 (15%)
FN3 438..526 CDD:238020 14/87 (16%)
EphA2_TM 540..610 CDD:464211 11/69 (16%)
PTKc_EphR_B 608..876 CDD:173638 100/291 (34%)
SAM_superfamily 906..969 CDD:472832
Blue background indicates that the domain is not in the aligned region.

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