DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr3 and dscama

DIOPT Version :9

Sequence 1:NP_001014459.2 Gene:dpr3 / 3346208 FlyBaseID:FBgn0053516 Length:522 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:566 Identity:105/566 - (18%)
Similarity:175/566 - (30%) Gaps:218/566 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 TTRAAATTR---AVIIIMALVVSIMQQQQQSLLW-----PFCNGLAAAAASTG-------QPDD- 142
            |.|.|..|.   :|.:...::.|.::.....:.|     |..:|......|||       |.:| 
Zfish   127 TVRVADQTAMRGSVAVFKCIIPSSVENYITVVSWERDTVPLVSGARFLITSTGALYILDVQKEDE 191

  Fly   143 --SGDGPTLSTFLSSS-QSQS-----PSPPAASASASSPSSFSSFAVAHGPQTE----ATNHTFK 195
              :....|...:.|.: ||.|     |:.|:.||.|.. ..|....|....:.|    |:.|...
Zfish   192 LFNYRCMTRHRYTSETRQSNSARLFVPADPSNSAPAIL-DGFEKREVMASHRVELPCKASGHPAP 255

  Fly   196 SLAFLDASFGSDLFAQTDAKRERS--GAADEESQDADTSQSL--------------------PIF 238
            ...:|.    ::...::|::..:|  |...|.:|.:||...:                    |:.
Zfish   256 KYRWLK----NNRPLESDSRFRQSVTGLLIERAQPSDTGSYVCEVWNSYGNAEVIGRLTVKEPLK 316

  Fly   239 DFGMPRNITGRTGHTEAIIKCRVDSLHDKSVSWIRKRD--------------------------- 276
            ....||.:.|..| ::..:.|.|....:..:||.|..|                           
Zfish   317 AVVSPRKVKGSVG-SQVSLSCSVTGSDEFELSWYRNGDKINTGANIRMNGINKENLVMDGMAKSD 380

  Fly   277 -------------------LHILTVGT-------------------------------ATYTSDK 291
                               ..||..||                               .|:|.|.
Zfish   381 GGVYQCFSRKAKMSAQDFVQVILEDGTPKILSAFSEKVVGPNDFVSLTCHVKGTPQPAITWTLDD 445

  Fly   292 RFQVTESKDSREWTLH-------------VKAPLAKDSGIYECQVNTEPKMSMAFQLNI-IEISP 342
            .   ..:||||...:|             :.....:|||:|.|..|.... ::::|..| :..|.
Zfish   446 E---VVAKDSRHRIVHSITAEGNVVSYLNISHIQVRDSGVYRCTCNNSAG-TVSYQARINVRGSA 506

  Fly   343 DAKAVISGPPDLHFKAGSAIILNCLVQQPSVKDIG-PIY---WYRGEHMITPF------------ 391
            |.:.:    .:|...||..:.::|.|       || |.|   |::..::: ||            
Zfish   507 DIRPM----KNLTAIAGWDMYIHCHV-------IGYPYYSIKWFKNSNLL-PFNDRQRAFENNGT 559

  Fly   392 --------DADDG--------QPEIPAGRGEH-PQGIPEDTSPND--------------IMSEVD 425
                    :.|:|        ||::...:..| ...:|....|.:              ::...|
Zfish   560 LKLLNVQKELDEGEYSCHVQVQPQLFKNQSVHVTVKVPPFIQPFEFPRYSIGHRVFVPCVVRSGD 624

  Fly   426 LQMEFATR---IAMESQLGDTL-----KSRLRISNAQTTDTGNYTC 463
            |.:.....   .::.:.||.|:     .|.|||||.|....|.|||
Zfish   625 LPISITWEKDGKSINASLGVTIDNIDFTSSLRISNLQRVHNGTYTC 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr3NP_001014459.2 Ig 243..330 CDD:299845 28/176 (16%)
IG_like 243..329 CDD:214653 28/175 (16%)
Ig 350..464 CDD:299845 35/169 (21%)
IG_like <441..477 CDD:214653 13/28 (46%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142 19/89 (21%)
I-set 236..311 CDD:254352 12/78 (15%)
IG_like 321..402 CDD:214653 10/81 (12%)
I-set 408..502 CDD:333254 16/97 (16%)
IGc2 524..579 CDD:197706 11/62 (18%)
Ig 614..679 CDD:319273 16/57 (28%)
Ig_DSCAM 708..787 CDD:143211
Ig 805..898 CDD:325142
FN3 894..988 CDD:238020
FN3 995..1092 CDD:238020
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.