DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr3 and robo4

DIOPT Version :9

Sequence 1:NP_001014459.2 Gene:dpr3 / 3346208 FlyBaseID:FBgn0053516 Length:522 Species:Drosophila melanogaster
Sequence 2:XP_689255.3 Gene:robo4 / 560765 ZFINID:ZDB-GENE-020809-1 Length:1134 Species:Danio rerio


Alignment Length:520 Identity:98/520 - (18%)
Similarity:175/520 - (33%) Gaps:157/520 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IVKQHKEQQHQQHQQQH-RQDQQDQKDPR-AAKQICNINLCGFLRRSGADDVDVIEPRSPGHAAD 69
            :.::.:.:.|.:|:..| |...:|:...| .::.:..|||                ||...|.:|
Zfish    31 VAQRSEGKGHLRHRLMHQRASHRDRAHRRKGSRLVSEINL----------------PRIVHHPSD 79

  Fly    70 VDVAAAAAGATTSVAATAAAAAAATTRAAATTRAVIIIMALVVSIMQQQQQSLLWPFCNGLAAAA 134
            | |....:.||.|..|..                             ..:.::.|          
Zfish    80 V-VVRVGSPATLSCRAEG-----------------------------NPEPTIQW---------- 104

  Fly   135 ASTGQPDDSGDGPTLSTFLSSSQSQSPSPPAASASASSPSSFSSFAVAHGPQTEATNHTFKSLAF 199
            ...|||        |.|....:|||....|        ..|...|:|..|.:.::....:..:| 
Zfish   105 LRNGQP--------LDTDKMDAQSQPIVLP--------DGSLFFFSVVPGRKGQSHEAVYACIA- 152

  Fly   200 LDASFGSDLFAQTDAKRERSGAADEESQDADTSQSLPIFDFGM-PRNITGRTGHTEAIIKCRVDS 263
                              .:...:..|::|....:....||.: |.::....|.. |.|.|....
Zfish   153 ------------------HNSIGNATSRNASLHIAALREDFRVQPSDVEVAIGEM-ATINCSPPV 198

  Fly   264 LH-DKSVSWIRKRDLHILTVGTATYTSDKRFQVTESKDSREWTLHVKAPLAK-DSGIYECQVNT- 325
            .| :.:|:|  ::|      |....:|::.:  ||.|...     :.||..| |||:|.|..:. 
Zfish   199 GHPEPNVTW--RKD------GILINSSNEHY--TELKGKL-----IIAPAQKNDSGVYSCIASNM 248

  Fly   326 -EPKMSMAFQLNIIEISPDAKAV-ISGPPDLHFKAGSAIILNCLVQ---QPSV---KDIGPIYWY 382
             ..:.|.|.:|:::     ||.| :..|.|:..:.|.:....|...   .||:   ::.||:  .
Zfish   249 IGVRESRAARLSVL-----AKPVLLRKPEDVSVQLGESAQFFCEADGDPMPSIEWSREQGPL--P 306

  Fly   383 RGEHMITPFDADDGQPEIPAGRGEHPQGI----PEDTSPNDIMSEVDLQMEFAT-RIAMESQLGD 442
            .|.::|.|               :|...|    .:|........|..|.:..|: ::.:|...|.
Zfish   307 NGRYLINP---------------DHSLQIHYVTAQDMGRYSCTVENKLGVSVASAQLLVEDAGGT 356

  Fly   443 TLKSRLRISNAQTTDTGNYTCQPTTASSASVLVHVINDENPAAMQKSGACPCALGPLQLLLHLLL 507
            .|:...:..:|......|.|...|.::.:.|:         ..:|..|:.|..|...::|...||
Zfish   357 RLRDLHKELSALRVSLENVTVMSTASNMSQVM---------WKLQSFGSQPHYLEGFEVLYRSLL 412

  Fly   508  507
            Zfish   413  412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr3NP_001014459.2 Ig 243..330 CDD:299845 22/90 (24%)
IG_like 243..329 CDD:214653 22/89 (25%)
Ig 350..464 CDD:299845 23/124 (19%)
IG_like <441..477 CDD:214653 7/35 (20%)
robo4XP_689255.3 Ig1_Robo 70..169 CDD:143317 28/189 (15%)
I-set 71..168 CDD:254352 27/171 (16%)
I-set 175..261 CDD:254352 26/101 (26%)
Ig2_Robo 177..261 CDD:143201 25/99 (25%)
I-set 265..350 CDD:254352 18/101 (18%)
Ig 282..350 CDD:299845 14/84 (17%)
FN3 373..448 CDD:214495 11/49 (22%)
FN3 472..560 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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