DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr3 and ncam1a

DIOPT Version :9

Sequence 1:NP_001014459.2 Gene:dpr3 / 3346208 FlyBaseID:FBgn0053516 Length:522 Species:Drosophila melanogaster
Sequence 2:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio


Alignment Length:247 Identity:50/247 - (20%)
Similarity:68/247 - (27%) Gaps:101/247 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 RTGHTE----------AIIKCRVDSLHDKSVSWIRKRDLHILTVGTATYTSDKRFQVTESKDSRE 303
            ||.:||          ..:.|..|...:.:|.|.|         |.....||:::.:.|  |..|
Zfish   212 RTRYTELNATADINQAVTLACHADGYPEPTVKWAR---------GNTELESDEKYSLNE--DGSE 265

  Fly   304 WTLHVKAPLAKDSGIYECQVNTEPKMSMAFQLNIIEISPDAKAVISGPPDLHFKAG---SAIILN 365
            .|  :|.....|.|.|:|....                               |||   ..:.||
Zfish   266 LT--IKDVNKLDEGDYKCIARN-------------------------------KAGERSEEVTLN 297

  Fly   366 CLVQQPSVKDIGPIYWYRGEHMITPFDADDGQPEIPAGRGEHPQGIPEDTSPNDIMSEVDLQMEF 430
            ..| ||.:..:........|..||......|.|                 :||.|.|       |
Zfish   298 VFV-QPKITFLENQTASELEEQITLTCEATGDP-----------------TPNIIWS-------F 337

  Fly   431 ATRIAMESQ-------------------LGDTLKSRLRISNAQTTDTGNYTC 463
            ..|:..|::                   ..|...|.|.:...|.||.|.|.|
Zfish   338 GRRVFTENEQASWTRPEKHKSLDGNVVVRSDARVSSLTLKYVQFTDAGQYLC 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr3NP_001014459.2 Ig 243..330 CDD:299845 21/90 (23%)
IG_like 243..329 CDD:214653 21/89 (24%)
Ig 350..464 CDD:299845 29/136 (21%)
IG_like <441..477 CDD:214653 9/23 (39%)
ncam1aXP_009293555.1 Ig 20..112 CDD:299845
I-set 21..111 CDD:254352
IG_like 121..200 CDD:214653
IGc2 128..189 CDD:197706
Ig 208..301 CDD:299845 27/133 (20%)
IG_like 219..298 CDD:214653 21/122 (17%)
Ig 300..406 CDD:299845 24/115 (21%)
IG_like 308..406 CDD:214653 21/106 (20%)
ig 413..498 CDD:278476
IG_like 415..498 CDD:214653
fn3 505..589 CDD:278470
FN3 624..715 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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