DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr3 and lsamp

DIOPT Version :9

Sequence 1:NP_001014459.2 Gene:dpr3 / 3346208 FlyBaseID:FBgn0053516 Length:522 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:318 Identity:70/318 - (22%)
Similarity:112/318 - (35%) Gaps:121/318 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 NITGRTGHTEAIIKCRVDSLHDKS--VSWIRKRDLHILTVGTATYTSDKRFQVTESKDSREWTLH 307
            |||.|.|.| ||::|.|:   |:|  |:|:.:..  |:..|...::.|.|.:: |.:...|::|.
 Frog    40 NITVRQGDT-AILRCFVE---DRSSRVAWLNRSG--IIFAGDDKWSLDPRVEL-EKRSLLEYSLR 97

  Fly   308 VKAPLAKDSGIYECQVNTEPKMSMAFQLNIIEISPDAKAVISGPPDLHFKAGSAIILNCLVQQPS 372
            ::.....|.|.|.|.|.|:..........|:::.|....:.:   |:....||.:.|.|      
 Frog    98 IQKVDVSDEGPYTCSVQTKQHTKTTQVYLIV
QVPPKISNISA---DITVNEGSNVTLMC------ 153

  Fly   373 VKDIGPIYWYRGEHMIT--------------PFDADDGQPEIPAGRGEHPQGIPEDTS------- 416
                  |.:.|.|.|||              .|:.::...||        |||..:.|       
 Frog   154 ------IAYGRPEPMITWRHLTPTAGTSPARDFEGEEEFLEI--------QGITREQSGRYECKA 204

  Fly   417 PNDIMS----EVDLQMEFATRI----AMESQLG---------------------DTLKSRLRISN 452
            .|::.|    :|.:.:.:...|    :.|:..|                     |..:|| ||::
 Frog   205 ANEVASADVKQVRVTVNYPPIITESKSNEATTGKQAILRCEASAVPAPDFEWYKDDTRSR-RINS 268

  Fly   453 AQTTDT-------------------GNYTC-------------------QPTTASSAS 472
            ||..:.                   |||||                   .||...|||
 Frog   269 AQGLEIRNTGSRSVLMVANVTEEHYGNYTCVAANKLGITNTSLYLYKRVSPTKPMSAS 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr3NP_001014459.2 Ig 243..330 CDD:299845 27/86 (31%)
IG_like 243..329 CDD:214653 27/85 (32%)
Ig 350..464 CDD:299845 36/201 (18%)
IG_like <441..477 CDD:214653 18/91 (20%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 27/94 (29%)
FR1 38..54 CDD:409353 8/14 (57%)
Ig strand A' 39..45 CDD:409353 3/4 (75%)
Ig strand B 47..55 CDD:409353 4/8 (50%)
CDR1 55..59 CDD:409353 2/6 (33%)
FR2 60..67 CDD:409353 2/6 (33%)
Ig strand C 60..66 CDD:409353 2/5 (40%)
CDR2 68..78 CDD:409353 2/11 (18%)
Ig strand C' 70..73 CDD:409353 1/2 (50%)
Ig strand C' 75..78 CDD:409353 0/2 (0%)
FR3 79..114 CDD:409353 9/35 (26%)
Ig strand D 83..90 CDD:409353 2/7 (29%)
Ig strand E 93..99 CDD:409353 2/5 (40%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 1/3 (33%)
Ig strand G 119..128 CDD:409353 0/8 (0%)
FR4 121..128 CDD:409353 0/6 (0%)
Ig_3 131..206 CDD:404760 19/97 (20%)
Ig strand A' 138..143 CDD:409353 1/7 (14%)
Ig strand B 149..156 CDD:409353 3/18 (17%)
Ig strand C 162..167 CDD:409353 3/4 (75%)
Ig strand C' 173..175 CDD:409353 0/1 (0%)
Ig strand E 185..191 CDD:409353 2/13 (15%)
Ig strand F 198..205 CDD:409353 0/6 (0%)
Ig strand G 212..220 CDD:409353 1/7 (14%)
Ig_3 223..302 CDD:404760 15/79 (19%)
putative Ig strand A 224..230 CDD:409353 1/5 (20%)
Ig strand B 240..244 CDD:409353 0/3 (0%)
Ig strand C 253..257 CDD:409353 0/3 (0%)
Ig strand E 281..285 CDD:409353 0/3 (0%)
Ig strand F 295..300 CDD:409353 4/4 (100%)
Ig strand G 308..311 CDD:409353 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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