DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG33543 and Chl1

DIOPT Version :9

Sequence 1:NP_001014458.3 Gene:CG33543 / 3346207 FlyBaseID:FBgn0053543 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_038964701.1 Gene:Chl1 / 89828 RGDID:620122 Length:1224 Species:Rattus norvegicus


Alignment Length:419 Identity:95/419 - (22%)
Similarity:149/419 - (35%) Gaps:113/419 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 DSTSSGG-SGTGGAPPDRPP---TPPLSLQPSTPSITHFVNESFIIFC-----QTVQKDIDTKWR 81
            ||:||.. |....:...|.|   .||..: .|..|.|....::.::.|     .|.|    .:|.
  Rat   231 DSSSSTEISNQANSIKQRKPKLLLPPAQI-GSASSKTVLKGDTLLLECFAEGLPTPQ----IEWS 290

  Fly    82 D-----PRGQTRENTKGRVHIEKKTTGLLALVFEHIALEDRGNWTCEVNGNRNGNRNVNVEREFL 141
            .     |:|      :..:.|.:||     |..|:::.:||||:.|..|         |:..:..
  Rat   291 KLGSELPKG------RATIEIHEKT-----LKIENVSYQDRGNYRCTAN---------NLLGKAS 335

  Fly   142 ASFELLVNQKISFGKTEQVQSVREGRDAMVNCFVEGMPAPEVSWLYNGEYINTVNSTKHNRLSNG 206
            ..|.::|.:...:.|..|......|.:.::.|..||.|.|.:.|..||..|.     .|....:.
  Rat   336 HDFHVIVEEPPRWKKKPQSAVYSTGSNGILLCEAEGEPQPTIKWRVNGLPIE-----NHPFPGDV 395

  Fly   207 LYIRNVSQAD-----AGEYTCRAMRITPTF---SDSDQITILLRIQHKPHWFFNETLPVQYAYVG 263
            ::.|.:|..:     ...|.|.|..|..|.   ::.|.:.::..||.|....: ||:      ||
  Rat   396 MFPREISFTNLQPNHTAVYQCEASNIHGTILANANIDVVDVVPLIQTKNEENY-ETV------VG 453

  Fly   264 GAVNLSCDAMGEPPPSFTW-----LHNNKGIVGFNHRIFVADYGATLQLQMKNASQFGDYKCKVA 323
            .:..|.|:....|..:..|     .|..:|.....|.      ..||:::.......|.|.|.|.
  Rat   454 YSAFLHCEYFASPKATVVWEVADETHPLEGGRYHTHE------NGTLEIERTTEEDAGSYSCWVD 512

  Fly   324 NPLGM--------LERVIKLRPGPKPLGPR--RFQLKKLY------------------------- 353
            |.:|.        :....|||..||  .||  :..:.:||                         
  Rat   513 NTMGKAVITANLDIRNATKLRVFPK--NPRIPKSHVLELYCESQCDSHLKHSLKLSWSKDGEAFE 575

  Fly   354 TNGFE-----LDIQTPRMSNVSDEMQ-IY 376
            .||.|     :|.....:||:|.|.| ||
  Rat   576 MNGTEDGRIVIDGANLTISNISGEDQGIY 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33543NP_001014458.3 IGc2 165..224 CDD:197706 15/63 (24%)
IG_like 256..336 CDD:214653 18/92 (20%)
IGc2 263..327 CDD:197706 15/68 (22%)
FN3 341..445 CDD:238020 15/69 (22%)
Chl1XP_038964701.1 Ig 34..125 CDD:416386
Ig strand A 34..38 CDD:409353
Ig strand A' 43..47 CDD:409353
Ig strand B 52..59 CDD:409353
Ig strand C 65..70 CDD:409353
Ig strand C' 73..75 CDD:409353
Ig strand D 81..84 CDD:409353
Ig strand E 89..93 CDD:409353
Ig strand F 104..112 CDD:409353
Ig strand G 115..125 CDD:409353
IgI_2_L1-CAM_like 134..224 CDD:409432
Ig strand B 148..152 CDD:409432
Ig strand C 162..166 CDD:409432
Ig strand E 185..189 CDD:409432
Ig strand F 200..205 CDD:409432
Ig strand G 216..219 CDD:409432
Ig 261..343 CDD:416386 22/105 (21%)
Ig strand B 273..277 CDD:409353 0/3 (0%)
Ig strand C 286..290 CDD:409353 1/7 (14%)
Ig strand E 308..312 CDD:409353 3/8 (38%)
Ig strand F 322..327 CDD:409353 2/4 (50%)
Ig strand G 335..338 CDD:409353 0/2 (0%)
Ig4_L1-NrCAM_like 347..434 CDD:409367 21/91 (23%)
Ig strand B 363..367 CDD:409367 0/3 (0%)
Ig strand C 376..380 CDD:409367 0/3 (0%)
Ig strand E 399..403 CDD:409367 1/3 (33%)
Ig strand F 413..418 CDD:409367 2/4 (50%)
Ig strand G 426..429 CDD:409367 0/2 (0%)
Ig 447..524 CDD:416386 19/89 (21%)
Ig strand A' 447..451 CDD:409353 1/4 (25%)
Ig strand B 454..463 CDD:409353 2/8 (25%)
Ig strand C 469..474 CDD:409353 1/4 (25%)
Ig strand C' 477..480 CDD:409353 0/2 (0%)
Ig strand D 485..490 CDD:409353 0/4 (0%)
Ig strand E 491..498 CDD:409353 2/6 (33%)
Ig strand F 505..513 CDD:409353 4/7 (57%)
Ig strand G 516..524 CDD:409353 1/7 (14%)
Ig 528..627 CDD:416386 20/79 (25%)
Ig strand A 528..534 CDD:409353 2/5 (40%)
Ig strand A' 537..542 CDD:409353 3/6 (50%)
Ig strand B 545..553 CDD:409353 2/7 (29%)
Ig strand C 564..568 CDD:409353 0/3 (0%)
Ig strand D 583..586 CDD:409353 0/2 (0%)
Ig strand E 589..593 CDD:409353 0/3 (0%)
Ig strand F 602..609 CDD:409353 2/3 (67%)
Ig strand G 616..620 CDD:409353
FN3 627..716 CDD:238020
fn3 730..811 CDD:394996
FN3 832..926 CDD:238020
FN3 931..1026 CDD:238020
Bravo_FIGEY 1120..1201 CDD:404722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.