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Protein Alignment CG33543 and Ntm

DIOPT Version :10

Sequence 1:	NP_001014458.3	Gene:	CG33543 / 3346207	FlyBaseID:	FBgn0053543	Length:	468	Species:	Drosophila melanogaster
Sequence 2:	NP_001418383.1	Gene:	Ntm / 50864	RGDID:	620958	Length:	367	Species:	Rattus norvegicus

Alignment Length:	286	Identity:	62/286 - (21%)
Similarity:	116/286 - (40%)	Gaps:	53/286 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    60 FVNESFIIFCQTVQKDIDTKW-RDPRGQTRENTKGRVHIEKKTTGLLALVFEHIALEDRGNWTCE 123
            ::|.|.|::..      :.|| .|||.....||:.:..||          .:::.:.|.|.:||.
  Rat    68 WLNRSTILYAG------NDKWCLDPRVVLLSNTQTQYSIE----------IQNVDVYDEGPYTCS 116

  Fly   124 VNGNRNGNRNVNVEREFLASFELLVNQKISFGKTEQVQSVREGRDAMVNCFVEGMPAPEVSWLY- 187
            |..:.:..         .:...|:|.......:.....|:.||.:..:.|...|.|.|.|:|.:
  Rat   117 VQTDNHPK---------TSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEPTVTWRHI 172

  Fly   188 NGEYINTVNSTKHNRLSNGLYIRNVSQADAGEYTCRAMRITPTFSDSDQITILLRIQHKPHW--F 250
            :.:.:..|:..::      |.|:.:::..:|||.|.|       |:.....::.|::...::  :
  Rat   173 SPKAVGFVSEDEY------LEIQGITREQSGEYECSA-------SNDVAAPVVRRVKVTVNYPPY 224

  Fly   251 FNET----LPVQYAYVGGAVNLSCDAMGEPPPSFTWLHNNKGIVGFNHRIFVADYGATLQLQMKN 311
            .:|.    :|     ||....|.|:|...|...|.|..::|.:|.....:.|.:.....:|...|
  Rat   225 ISEAKGTGVP-----VGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVENRPFLSRLTFFN 284

  Fly   312 ASQ--FGDYKCKVANPLGMLERVIKL 335
            .|:  :|:|.|..:|.||.....|.|
  Rat   285 VSEHDYGNYTCVASNKLGHTNASIML 310

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.