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Protein Alignment CG33543 and Dscam4

DIOPT Version :9

Sequence 1:	NP_001014458.3	Gene:	CG33543 / 3346207	FlyBaseID:	FBgn0053543	Length:	468	Species:	Drosophila melanogaster
Sequence 2:	NP_001261571.1	Gene:	Dscam4 / 2769008	FlyBaseID:	FBgn0263219	Length:	1935	Species:	Drosophila melanogaster

Alignment Length:	463	Identity:	103/463 - (22%)
Similarity:	174/463 - (37%)	Gaps:	75/463 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly    21 ILGQLDSTSSGGSGTGGAPPDRPPT-----------PPLSLQPSTPSITHFVNESF--IIFCQTV 72
            |:.||......|:.|..|...:..|           || .:.| ..::|:.:.|..  .|.||.:
  Fly   574 IIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPP-KIMP-IQAMTNMLREGMRAAISCQIL 636

  Fly    73 QKDIDTKWR-DPRGQTRENTKGRV--HIEKKTTGLLALVFEHIALEDRGNWTCEVNGNRNGNRNV 134
            :.|:...:| :..|:....|...|  .:::.:.   :||.|||:.:..||:|| :..|..|....
  Fly   637 EGDLPVSFRWERNGKPLIGTGNEVFRRLDEYSA---SLVIEHISSDHSGNYTC-IASNVAGTERF 697

  Fly   135 NVEREFLASFELLVNQKISFGKTEQVQSVREGRDAMVNCFVEGMPAPEVSWL-----YNGEYINT 194
            .|        .|.||....:....:..|.:.|.|.:::|...|.|.|.::|.     ..|||.:.
  Fly   698 TV--------PLTVNVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDF 754

  Fly   195 VNSTKHNRLSNG-LYIRNVSQADAGEYTCRAMRITPTFSDSDQITILLRIQHKPHWFFNETLPVQ 258
            :.........|| ::.:.:|:...|.:.|.|..   .........|.|::....| |..:|..:.
  Fly   755 LYEPTVQLFPNGTIFFKKISKESQGHFLCEAKN---NIGSGVSKVIFLKVNVPAH-FQTKTKQIS 815

  Fly   259 YAYVGGAVNLSCDAMGEPPPSFTW------------LHNNKGIVGFNHRIFVADYGATLQLQMKN 311
            .| .|..|::.|:..|:.|..|.|            |.:.     :..|..|.|.|...:|.:.:
  Fly   816 VA-KGKQVHVQCNVQGDNPIDFKWKIQATQQYLDESLDSR-----YTIRDQVLDDGMVSELGISH 874

  Fly   312 A--SQFGDYKCKVANPLGMLERVIKLRPGPKPLGPRRFQLKKLYTNGFELDIQTPRMSNVS-DEM 373
            .  ...|.|.|:.:|..|..|..|:|.....|..|:..::....:...:|....|...|.. :|.
  Fly   875 TYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEY 939

  Fly   374 QIYGYRVAYMSDTEFKFSAGNWSYAKQRDFSFHGGKHFI-IPHLETNTTYLMRAASRNLAGLSDW 437
            .||           :|..:..|..|:.  .:..|.:..| |..|.....|.:|.::.|..|.|::
  Fly   940 HIY-----------YKQISDIWQNAEH--LTIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEF 991

  Fly   438 SPVKVFTT 445
            |.|...||
  Fly   992 SEVVQVTT 999

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.