DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG33543 and ncam-1

DIOPT Version :9

Sequence 1:NP_001014458.3 Gene:CG33543 / 3346207 FlyBaseID:FBgn0053543 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_741709.1 Gene:ncam-1 / 180418 WormBaseID:WBGene00017184 Length:955 Species:Caenorhabditis elegans


Alignment Length:510 Identity:116/510 - (22%)
Similarity:185/510 - (36%) Gaps:135/510 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SLQPSTPSITHFVNESFIIFCQTVQKDIDTKWRDPRGQTRENTKGRVHIEKKT------------ 101
            |.:..:.::|.:...:..:|      |:....|...|.|.|...|.|...|.|            
 Worm   227 SFETLSVNVTGYARPTITVF------DVPNGNRGIEGHTIELKCGAVGKPKPTYKWFFEDDEVPI 285

  Fly   102 ---------TGLLALVFEHIALEDRGNWTCEVNGNRNGNR-----------NVNVEREFL----- 141
                     .||  |:.|.:..||.|.:.|..|.....|.           .|:::.|::     
 Worm   286 ARSDKHNVEEGL--LIIESLNSEDAGTYKCVANNTVGSNERTFDLAVFLKPKVDLKHEYVVKEGD 348

  Fly   142 ---------------ASF-----ELLV-NQKISFGKTEQVQ-----------SVREGRDAMVNCF 174
                           |.|     |..| |:.:|.|.:|:::           :.....:......
 Worm   349 DVELVCSYHGEGHVTAKFVSGHSEFAVRNEAVSAGNSEEIRPESNESEEVTTTSENSEETSTQDE 413

  Fly   175 VEGMPAPEV-------SWLYNGEYINTVNSTKHNRLSNG----------------LYIRNVSQAD 216
            ||...|..|       |...:||......|.|..|.::.                |.|:::|..|
 Worm   414 VELKSAENVNDEEDHTSQQDDGEQDEQEESKKWKRFADDVNNQRISVRAEENKLILTIKSISLED 478

  Fly   217 AGEYTCRAMRITPTFSDSDQITILLRIQHKP---HWFFNETLPVQYAYVGGAVNLSCDAMGEPPP 278
            |.:|||.......|.:...|:.|:    |.|   |:    |.|...::.|..|::.||....|.|
 Worm   479 AADYTCAVSNDAGTVNKVTQVGII----HPPTLRHY----TGPHIRSFDGNTVSVYCDVSAVPSP 535

  Fly   279 SFTWLHNNKGIVGFNHRIFVADYGATLQLQMKN---ASQFGDYKCKVANPLGMLERVIKLRPGPK 340
            .:.|..|.|.:......|.:...|::.:|.::|   :..||.|.|:..|.:|.||:.|.:.....
 Worm   536 KWHWFKNGKEVEANGVSIQIFTQGSSTKLTLENFDGSDNFGVYTCRADNGVGQLEKQIDVIKVVS 600

  Fly   341 PLGPRRFQLKKL-YTN----GFELDIQTPRMSNVSDEMQIYGYRVAYMSDTEFKFSAGNWSYAKQ 400
            |..|.....||: |.|    .||.||.....|    :.|.....||.:.:.|..:   |||:|:.
 Worm   601 PATPSGMNCKKMVYPNYGKCSFESDIYEKEES----KPQTMELLVAKLEEMESDY---NWSHAQP 658

  Fly   401 RDFSFHGGKHFIIPHLETNTTYLMRAASRNLAGLSDWS-PVKVFTTAAGCSWSPW 454
            ....|.  ....||:|.:||.|:::|.:.|.||.|::| .:.:.||      .||
 Worm   659 VSVPFE--DDLTIPNLTSNTQYVIKARAVNEAGSSEYSEEISLETT------DPW 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33543NP_001014458.3 IGc2 165..224 CDD:197706 18/81 (22%)
IG_like 256..336 CDD:214653 23/82 (28%)
IGc2 263..327 CDD:197706 18/66 (27%)
FN3 341..445 CDD:238020 32/109 (29%)
ncam-1NP_741709.1 IG 64..142 CDD:214652
Ig 69..140 CDD:143165
IG_like 153..236 CDD:214653 1/8 (13%)
Ig 160..222 CDD:299845
IG_like 256..330 CDD:214653 17/75 (23%)
IGc2 256..320 CDD:197706 16/65 (25%)
IG_like <445..499 CDD:214653 11/53 (21%)
Ig <445..498 CDD:143165 11/52 (21%)
IG_like 520..596 CDD:214653 22/75 (29%)
IGc2 520..587 CDD:197706 18/66 (27%)
FN3 <652..701 CDD:238020 17/50 (34%)
FN3 <817..873 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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