DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-II and hmcn2

DIOPT Version :9

Sequence 1:NP_001014485.3 Gene:side-II / 3346206 FlyBaseID:FBgn0259213 Length:1064 Species:Drosophila melanogaster
Sequence 2:XP_001920501.5 Gene:hmcn2 / 565032 ZFINID:ZDB-GENE-030131-9765 Length:4212 Species:Danio rerio


Alignment Length:1057 Identity:218/1057 - (20%)
Similarity:353/1057 - (33%) Gaps:346/1057 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 KTKDIDAVEGKSVSLPCPIT--EPLDNVYMVLWFRD------NAGIPL----------------- 92
            :.:::..|||..:||.|.:.  .|.|    ::|.:|      ..||.:                 
Zfish  1935 REEEMSVVEGHMISLLCDVQAYPPAD----IIWTKDGQMLEFTTGIHILPGGQMLQIPRAGQQDA 1995

  Fly    93 --YSFDVRDKESREQ--------------PRHWSAPEV----FGS----RAKFHFDSQPAT---- 129
              |.....:...::|              ||..|..||    .||    |.:.:...:|..    
Zfish  1996 GQYVCTATNSAGQDQKSILLTIYALPALVPRLESESEVRTPLVGSTLILRCEANGIPKPEVTWYR 2060

  Fly   130 ----------LEIKRH----------DQGIYRCRVDFRTSQT-QSFRFNLSVIILPEQPIIMDRW 173
                      |.|:|.          |.|:|.|:|.....|. ::||..:.|      |.:|:  
Zfish  2061 NGLQLAAGNGLRIERQQLEIVGVQVADGGVYTCKVSNIAGQVDRTFRVTVHV------PPVME-- 2117

  Fly   174 GRQLNGTQLGPKQE------GDDIVITCRVVGGRPQPQVRWLVNGLLVDNQNEHNSGDVIENRLL 232
                     ||..|      |..|.:.|. ..|.|.|.:.||            ..|..||:.|.
Zfish  2118 ---------GPLHETLTQNLGSHITLICE-ASGIPVPNIAWL------------KDGSPIESSLQ 2160

  Fly   233 WP-SVQRNDLN---------SVFTCQALNTQLDKPKEKSFILDMHLKPLVVKILEPPSSMIADRR 287
            |. |.:.|.|.         ..:||.|.||:....|:.|           :.|..|||.:.:...
Zfish  2161 WNWSTRANRLELGPLQLSHAGTYTCIAKNTEGQTQKDYS-----------LTIYAPPSIIDSGHP 2214

  Fly   288 YEVS----------CESSGSRPNAIITWYK-GKRQLRRTKDDISKNSTRSELSFVPTTDDDGKSI 341
            .|||          |.:.|| |...::|.: ||..:....:.|:.:...|.|:|:....:|..:.
Zfish  2215 SEVSAPVGEELALECRAMGS-PAPKVSWLRNGKTLVNGNTEHINISPDGSTLTFLSVKPEDSGTY 2278

  Fly   342 TCRAENPNVNGLYLET-MWKLNVVYPPLVTLRLGSTLTPDDI--KEGDDVYFECHVQSNPQWRKL 403
            ||.|    |:....|| ::.|..:.||.::   |.|..|.::  .:...|..||..:..|| .::
Zfish  2279 TCLA----VSSAGQETKIYTLFALVPPSIS---GETSVPREVHTTQHSVVTLECKAKGTPQ-PQI 2335

  Fly   404 LWLHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPMCKH 468
            .||.:|..|..:...|::.::.:|.:..:....:|.|.|.|.:..|....| ..|:|:..|..:.
Zfish  2336 SWLRDGHPLLLSPRIRLLSADSTLRISPVHLSDSGIYTCVARSRAGLAELN-FDLQVQAPPAVER 2399

  Fly   469 ADRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSILKYTPVTDQ 533
            .:....:...:..:|.:.||.:..||| |..|.  ..|:.|.: .....::|..:....:.|...
Zfish  2400 TEPTEQVAVVQGSSVTLTCEARGVPPP-TLSWL--KDGQPLSL-HRNLLLDGQETRFLLSDVGPS 2460

  Fly   534 DYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIPGYDGGL---PQIF 595
            |.|..||.|||:.|                   |:...||.|.|..     |...|.|   .|:.
Zfish  2461 DAGLYSCVASNQAG-------------------SSTKTFNLTVLEP-----PKITGSLSPEEQLI 2501

  Fly   596 ----VLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQENNSLRLRIYSYNQKGRSAAYLL 656
                :||:....||:....||..::.....:|      |.:.|.:...|||   |:.....|.|.
Zfish  2502 AVDSLLELECIATGLPPPTLSWLKDGRPIQDN------MAIIERDGQLLRI---NKVQVEDAGLY 2557

  Fly   657 TDFIIGSTAYKTDDD---VTLTLSPVIVGS--VLTIIIIGVAIAIRIFVVTFVHNLRRNRHHGSK 716
            |  .:.|:....|..   |.:.|.|.::||  :.|:.:                           
Zfish  2558 T--CLASSPAGEDGRNHWVRVQLPPTLLGSNDIRTVSV--------------------------- 2593

  Fly   717 ATAAG-VTAQ-------PSDVFKGGNLEKPRWQHTDIKTK---------SSEDL-VEDERDPDVI 763
             .|.| :|.:       |.::         .|...::|.:         |.:.| ::|.|..|  
Zfish  2594 -PAKGHLTLECQTDSDPPPEI---------EWYKDNVKVQLGGRIQSIASGQFLEIQDVRMHD-- 2646

  Fly   764 PSQYVGGSSAGSSGSNASNVGSTTAGTAT-----------GSSTSTAVVANANAAASAMAGPGGA 817
                     :|......:|:..:|:...|           |||   .::|:....|.......||
Zfish  2647 ---------SGQYSCVVTNIAGSTSLFFTVEILLPPVIREGSS---LIIAHVGQDAVLPCEVEGA 2699

  Fly   818 TSSA------------------------------SATD-GHQFASGTAAAGGGASKWSPNGNVTT 851
            .||:                              ..:| |..:.|.:..||      |.:..:..
Zfish  2700 PSSSVMWRKDGGPVPLHNNRFTLLSEGSLRISTVQLSDVGRYYCSVSNQAG------SDHRGMDL 2758

  Fly   852 TMLTGDAV-----NATVTYNQINAQRAQLLAAVAAVGGGCSSTVISPSSSILGGLGKPLGMGMGM 911
            .:..|.::     |.||    :..|||.|         .|.||.|..........|.|:.:....
Zfish  2759 KVYVGPSISPGPFNVTV----VTGQRAVL---------SCESTGIPAPQVSWRRNGSPISVDQSS 2810

  Fly   912 GLG-MGVGGTVIGSPTS 927
            ... |..|..||.|||:
Zfish  2811 AYRLMSSGSLVITSPTA 2827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IINP_001014485.3 IG_like 55..160 CDD:214653 34/178 (19%)
Ig 57..160 CDD:299845 34/176 (19%)
Ig 188..251 CDD:299845 19/72 (26%)
Ig 289..363 CDD:299845 22/85 (26%)
IG_like 289..351 CDD:214653 18/72 (25%)
Ig_2 376..460 CDD:290606 20/85 (24%)
IG_like 383..454 CDD:214653 16/70 (23%)
Ig 470..548 CDD:299845 19/77 (25%)
IG_like 481..557 CDD:214653 20/75 (27%)
hmcn2XP_001920501.5 VWA_2 38..208 CDD:290253
IG 441..512 CDD:214652
Ig 441..502 CDD:299845
I-set 516..603 CDD:254352
Ig 533..600 CDD:143165
IG 613..691 CDD:214652
Ig 624..690 CDD:143165
IG 710..784 CDD:214652
Ig 714..781 CDD:143165
IG 794..879 CDD:214652
Ig 794..879 CDD:299845
I-set 885..972 CDD:254352
Ig 904..972 CDD:299845
IG_like 982..1063 CDD:214653
IGc2 989..1053 CDD:197706
IG_like 1083..1159 CDD:214653
Ig 1089..1156 CDD:143165
I-set 1163..1241 CDD:254352
IGc2 1176..1231 CDD:197706
Ig 1244..1327 CDD:299845
IG_like 1258..1335 CDD:214653
Ig 1338..1430 CDD:299845
I-set 1344..1428 CDD:254352
IG_like 1441..1523 CDD:214653
IGc2 1448..1513 CDD:197706
IG_like 1536..1616 CDD:214653
IGc2 1545..1606 CDD:197706
IG_like 1638..1714 CDD:214653
Ig 1644..1711 CDD:143165
IG_like 1753..1830 CDD:214653
Ig 1760..1822 CDD:143165
I-set 1834..1918 CDD:254352
Ig 1851..1925 CDD:299845
IG_like 1937..2017 CDD:214653 14/83 (17%)
IGc2 1943..2007 CDD:197706 12/67 (18%)
IG_like 2031..2110 CDD:214653 17/78 (22%)
IGc2 2039..2100 CDD:197706 12/60 (20%)
I-set 2114..2202 CDD:254352 27/122 (22%)
IGc2 2129..2192 CDD:197706 21/75 (28%)
IG 2214..2295 CDD:214652 21/85 (25%)
IGc2 2222..2287 CDD:197706 16/69 (23%)
I-set 2307..2391 CDD:254352 20/85 (24%)
IGc2 2321..2381 CDD:197706 15/60 (25%)
I-set 2400..2484 CDD:254352 23/106 (22%)
IGc2 2410..2474 CDD:197706 19/67 (28%)
IG_like 2496..2576 CDD:214653 20/90 (22%)
IGc2 2507..2566 CDD:197706 17/69 (25%)
IG 2589..2669 CDD:214652 16/127 (13%)
IGc2 2597..2659 CDD:197706 12/81 (15%)
IG 2679..2760 CDD:214652 14/89 (16%)
IGc2 2687..2750 CDD:197706 8/62 (13%)
I-set 2764..2851 CDD:254352 20/77 (26%)
Ig 2770..2845 CDD:299845 20/71 (28%)
IG 2863..2943 CDD:214652
Ig 2873..2942 CDD:299845
IG_like 2954..3032 CDD:214653
IGc2 2963..3023 CDD:197706
IG_like 3046..3122 CDD:214653
IGc2 3051..3113 CDD:197706
IG_like 3133..3214 CDD:214653
Ig 3144..3213 CDD:299845
IG 3224..3303 CDD:214652
IGc2 3232..3293 CDD:197706
IG_like 3316..3394 CDD:214653
IGc2 3321..3384 CDD:197706
TSP1 3401..3452 CDD:214559
G2F 3455..3636 CDD:284812
EGF_CA 3691..3721 CDD:214542
Furin-like 3728..3857 CDD:279142
EGF_CA 3731..3774 CDD:284955
EGF_CA 3776..3814 CDD:214542
EGF_CA 3816..3849 CDD:238011
EGF_CA 3858..3899 CDD:284955
EGF_CA 3901..3940 CDD:214542
EGF_CA 4005..4044 CDD:214542
EGF_CA 4045..4085 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.