DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-II and ed

DIOPT Version :9

Sequence 1:NP_001014485.3 Gene:side-II / 3346206 FlyBaseID:FBgn0259213 Length:1064 Species:Drosophila melanogaster
Sequence 2:NP_001260013.1 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster


Alignment Length:1289 Identity:250/1289 - (19%)
Similarity:416/1289 - (32%) Gaps:435/1289 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 KDIDAVEGKSVSLPCPITEPLD-NVYMVLWFRDNAGIPLYSFDVRDKESREQPRHWSA-PEVFGS 117
            :.||..|...::|.|...:..: |.:...|.|                       |:| |..|.:
  Fly    44 ESIDTRENADLTLKCRFNDKYEANDFSFFWTR-----------------------WTANPAQFDN 85

  Fly   118 RA--------KFHFDSQPA----TLEIK----RHDQGIYRCRVDFRTSQT---QSFRFNLSVIIL 163
            .|        .:..|.||.    .|:||    ..|.|.:.||:..:.:..   |.|. ||:|:..
  Fly    86 VAIGEVQLSSGYRLDFQPERGIYDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFH-NLTVLTP 149

  Fly   164 PEQPIIMDRWGRQLNGTQLGPKQEGDDIVITCRVVGGRPQPQVRWLVNGL---LVDNQNEHNSGD 225
            |..|:|..  |.....|:..|.:      :||..:||.|.|.:.|...|.   |.....:..:.|
  Fly   150 PHPPVISP--GNIAVATEDKPME------LTCSSIGGSPDPTITWYREGSNTPLPATVLKGGTKD 206

  Fly   226 VIENRLLWPSVQRNDLNSVFTCQALNTQLDKPK--EKSFILDMHLKPLVVKILEPPSSMIADRRY 288
            ...|..|....:|.|..:.:.|...|..:::.|  |.:..|:::..|.|....|.|..:..||..
  Fly   207 QPTNATLSIIPRREDDGAKYKCVVRNRAMNEGKRLEATATLNVNYYPRVEVGPENPLRVERDRTA 271

  Fly   289 EVSC--ESSGSRPNAIITWYKGKRQLRRTKDDISKNSTRSELSFVPT-----TDDDGKSITCRAE 346
            ::.|  ::....||  :.|              ::|......|.|.|     ..|.|| .||.|:
  Fly   272 KLECNVDAKPKVPN--VRW--------------NRNGRFISSSLVHTIHRVSVQDAGK-YTCIAD 319

  Fly   347 NPNVNGLYL--ETMWKLNVVYPPLVTLRLGSTLTPDDIKEGDDVYFECHVQSNPQWRKLLWL--- 406
                |||..  |....|:::|||:|.:...:.    :.:|||.|...|:|.:||....:.||   
  Fly   320 ----NGLGKTGEQELILDILYPPMVVIESKTR----EAEEGDTVTIRCNVTANPAPVTIEWLKEN 376

  Fly   407 -----HNG-------IHLEH-------------------------NTSARVIR------------ 422
                 :||       :..:|                         :|.|.::|            
  Fly   377 SPDFRYNGDVLTLTSVRADHAGNYICRAVNIMQSQGMERSERVGNSTVALLVRHRPGQAYITPNK 441

  Fly   423 ------------------------------------SNQSLVLQ----KITKHYAGN---YACSA 444
                                                |.|.::.|    .|.|.:.||   |.|.|
  Fly   442 PVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGEFSSTQKILAQGPQYSIPKAHLGNEGKYHCHA 506

  Fly   445 INDEG------------------------------------------------------------ 449
            :|:.|                                                            
  Fly   507 VNELGIGMMATIVLEIHQPPQFLAKLQQHMTRRVADTDYTVTCSAKGKPAPSVKWLKDAVEILPE 571

  Fly   450 -----------------ETVSNQLPLRVKYTP-------------MCKHADRVILIGASKD---- 480
                             .||.:||..|.|..|             .|.:.:.|....:|..    
  Fly   572 ENLYEVQTNPDQGLNGMVTVQSQLKFRGKARPNGNALVPGDRGLYTCLYQNEVNSANSSMQLRIE 636

  Fly   481 -----------------ETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSE-RFSVNGS------ 521
                             ||.||||::||.|.|. |:|:|.|:...|.:.|: .:.::.:      
  Fly   637 HEPIVLHQYNKVAFDIRETAEVVCKVQAYPKPE-FQWQFGNNPSPLTMSSDGHYEISTTTDNNDI 700

  Fly   522 -RSILKYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELS---VDIQ 582
             .|:||...:|..|||..:|..:|.:.|.:.|...|  ....|...:|   ...||:.   |.:.
  Fly   701 YTSVLKINSLTHSDYGEYTCRVANTLDTIRAPIRLQ--QKGPPEKPTN---LRATEVGHNYVSLS 760

  Fly   583 CIPGYDGGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENL----DTLTS-------------- 629
            ..||:||||.:             |:|.:|....|:...|.|    .||.:              
  Fly   761 WDPGFDGGLSK-------------TKFFVSYRRVAMPREEQLIPDCATLANSNSAWVEVDCQRDI 812

  Fly   630 ----MMVQENNSLRLRIYSYNQKGRSAAYLLTDFIIGSTAYKTDDDVTLTLSP------VIVGSV 684
                ..::::.|...::.:.|.|..|.  ..::.::.:...:....:.:|..|      :.||:.
  Fly   813 PCKVTALEQHQSYAFKVKALNPKSDSP--YSSEIMVTTKVSRIPPPLQVTYEPNTRTLGIDVGAT 875

  Fly   685 LTIIIIGVAIAIRI-------FVVTFVHNLRRNRH---HGSKATAAGVTAQPSDVFKGGNLEKPR 739
            ...::..|...:..       .|||.:.||:.:.:   |..|.....:.|:.   ..||.    .
  Fly   876 CLNLVAVVESMVNADSPMAAWEVVTTMDNLQLSGNGPTHKEKIIDRIIGARR---VGGGR----A 933

  Fly   740 WQHTDIKTKSSEDL----VEDERDPDVIPSQYVGGSSAGSSGSNASNVGSTTAGTATGSSTSTAV 800
            ..||..:.:....|    :|||..|.|.....:..:.........:.:|......|...:|.|.:
  Fly   934 LGHTISEDEDDNGLNSLALEDENSPTVRVKLCLRTNPEHCGDYTDAEIGRPYIAEANALATPTLI 998

  Fly   801 VANANAAASAM-AG---------PGGATSSASATDGHQFASGTAAAGGGASKWSPNGNVTTTMLT 855
            ....:....|: ||         ...:..||:|.| ::..|...:........:|......:.|.
  Fly   999 AIIVSCVVFALFAGLILMFCRCKRNQSKKSAAAKD-YEMDSVRPSIVAAQQNQAPPPYYPASGLD 1062

  Fly   856 GDAVNATVTYNQINAQRAQLLAAVAAVGGGCSSTVISPSSSILGGLGKPLGMGMGMGLGMGVGGT 920
            ..|:..::   .:.........|:.|...|.|   ..|.|.::|     :|||.|: :|:||||:
  Fly  1063 NKALEHSM---DLALSMEDQKTALYATQNGYS---YHPGSGVVG-----VGMGGGV-VGVGVGGS 1115

  Fly   921 VI-----------GSPTSLSSTATLAAHLQPAHSSGVGTLPPGLGSGGGYILNAYASGRLHHPPG 974
            |:           ||...::....|:||          |:|.......||:.|.|::..    .|
  Fly  1116 VVSGMGGGVGGIGGSGVGVNGIPGLSAH----------TMPGNEWVNMGYMENNYSNSN----NG 1166

  Fly   975 GGVPG-------GATHTATLNRHHHQQQQLHHHPHHQQPHHSGSSLLMGSAGSV 1021
            |.|..       ..:..|..|:....|..::.:. .|||.:....|..|..|:|
  Fly  1167 GSVNSQDSLWQVKMSAAAVGNQQGMVQAPMNQYV-EQQPAYGYDPLTHGGYGAV 1219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IINP_001014485.3 IG_like 55..160 CDD:214653 27/125 (22%)
Ig 57..160 CDD:299845 27/123 (22%)
Ig 188..251 CDD:299845 15/65 (23%)
Ig 289..363 CDD:299845 19/82 (23%)
IG_like 289..351 CDD:214653 14/68 (21%)
Ig_2 376..460 CDD:290606 32/255 (13%)
IG_like 383..454 CDD:214653 30/242 (12%)
Ig 470..548 CDD:299845 27/106 (25%)
IG_like 481..557 CDD:214653 27/83 (33%)
edNP_001260013.1 Ig 50..147 CDD:299845 25/120 (21%)
I-set 146..249 CDD:254352 26/110 (24%)
Ig 168..249 CDD:299845 20/86 (23%)
IGc2 268..323 CDD:197706 18/75 (24%)
Ig_3 341..406 CDD:290638 13/68 (19%)
Ig_2 437..514 CDD:290606 12/76 (16%)
I-set 526..633 CDD:254352 10/106 (9%)
Ig 546..632 CDD:143165 10/85 (12%)
IG_like 654..736 CDD:214653 27/82 (33%)
Ig 656..734 CDD:143165 25/78 (32%)
FN3 741..848 CDD:238020 23/124 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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