DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-II and fred

DIOPT Version :9

Sequence 1:NP_001014485.3 Gene:side-II / 3346206 FlyBaseID:FBgn0259213 Length:1064 Species:Drosophila melanogaster
Sequence 2:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster


Alignment Length:1352 Identity:257/1352 - (19%)
Similarity:424/1352 - (31%) Gaps:518/1352 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 AVEGKSVSLPCP----ITEPLDNVYMVLWFRDNAGIPLYSFDVRDKESREQPRHWSAPEVFGSRA 119
            |.|.|.:.|.|.    ..:|     |:.|:|:.:.:||.|:.::.                ||  
  Fly   142 ATEEKPLELTCSSIGGSPDP-----MITWYREGSTVPLQSYALKG----------------GS-- 183

  Fly   120 KFHFDSQPATLEI--KRHDQGI-YRCRVDFR---------TSQTQSFRFNLSVIILPEQPIIMDR 172
            |.|:.:  |||:|  :|.|.|. |:|.|..|         ||.|.:..:...|.:.|:.|:    
  Fly   184 KNHYTN--ATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPL---- 242

  Fly   173 WGRQLNGTQLGPKQEGDDIV-ITCRVVGGRPQPQVRWLVNGLLVD--------NQNEHNSGDVIE 228
                        |.|.|.:. :.|||........|||..||..|.        ..|.|::|.   
  Fly   243 ------------KVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSATPTHTIYRVNRHHAGK--- 292

  Fly   229 NRLLWPSVQRNDLNSVFTCQALNTQLDKPKEKSFILDMHLKPLVVKILEPPSSMIADRRYE---- 289
                            :||.|.| .|.|..||..:||         :|.||...|..:.:|    
  Fly   293 ----------------YTCSADN-GLGKTGEKDIVLD---------VLYPPIVFIESKTHEAEEG 331

  Fly   290 ----VSCESSGSRPNAIITWYK-GKRQLRRTKDDISKNSTRSELS-------------------- 329
                :.|..:.:.....:.|.| |....|.|.:.::..|.|:|.:                    
  Fly   332 ETVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVE 396

  Fly   330 -------------------FVPTTD----DDGKSITCRAENPN---------------------- 349
                               ..|...    .:|.::||.|..|.                      
  Fly   397 GVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKI 461

  Fly   350 ------------------------VNGLYLETMWK--LNVVYPPLVTLRLGSTLTPDDIKEGD-D 387
                                    ||.|.:..:..  |.|..||....:|...:|.   :.|| |
  Fly   462 LAQGPQYSIPKAHLGSEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTR---RVGDVD 523

  Fly   388 VYFECHVQSNPQWRKLLWLHNGIHLEHNTSARVIRSNQS------LVLQKITK------------ 434
            ....|..:..|. .::.|:.:|..:........||:..:      :.:|.|.:            
  Fly   524 YAVTCSAKGKPT-PQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQL 587

  Fly   435 --HYAGNYACSAINDEGETVSNQLPLRVKYTPMCKHADRVILIGASKDETVEVVCEIQADPPPRT 497
              :..|.|.|...||. .:.::.:.||:::.|:..|  :...:.....|:.||||.:||.|.|. 
  Fly   588 LPNDRGLYTCLYENDV-NSANSSMHLRIEHEPIVIH--QYNKVAYDLRESAEVVCRVQAYPKPE- 648

  Fly   498 FRWKFNNSGETLDVGSERFSVNGSR--------SILKYTPVTDQDYGTLSCWASNEV-------- 546
            |:|::.|:...|.:.|:......:|        |||:...:...|||...|.|.|.:        
  Fly   649 FQWQYGNNPSPLTMSSDGHYEISTRMENNDVYTSILRIAHLQHSDYGEYICRAVNPLDSIRAPIR 713

  Fly   547 ----GTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIPGYDGGL--------------PQ 593
                |:.:.|...:::......||.|.|              ||::||.              |:
  Fly   714 LQPKGSPEKPTNLKILEVGHNYAVLNWT--------------PGFNGGFMSTKYLVSYRRVATPR 764

  Fly   594 IFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQEN----------NSLRLRIYSYNQK 648
            ...|...|....|..:.:|::.    |..|.:.:.....:||          .|...::|:.|.|
  Fly   765 EQTLSDCSGNGYIPSYQISSSS----SNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVYALNSK 825

  Fly   649 GRSAAYLLTDFIIGSTAYKTDDDVTLTLSPVIVGSVLTIIIIGVAIAIR-IFVVTFVHNLRRNRH 712
            |.|.   .::.|:.:|      .|:....|:.|.......::|:.:|.. :.::..|.:|     
  Fly   826 GTSG---YSNEILATT------KVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESL----- 876

  Fly   713 HGSKATAAGVTAQPSDVFKGGNLEKPRWQHTDIKTKSSEDLVEDERDPDVIPSQYVGGSSAGSSG 777
                     ||...:         .|.|:..:..|              ::||    ||......
  Fly   877 ---------VTRDAT---------VPMWEIVETLT--------------LLPS----GSETTFKE 905

  Fly   778 SNASNVG-------STTAGTATGSSTSTAVVANANAAASAMAGPGGATS-SASATDGHQFASGTA 834
            :..::|.       :||:|.:.|....:.:..:...|.:..||||.... .......|:.....|
  Fly   906 AIINHVSRPAHYTTATTSGRSLGVGGGSHLGEDRTMALAETAGPGPVVRVKLCLRSNHEHCGAYA 970

  Fly   835 AAGGGASKWSPNGNVTTTMLTGDAVNATVTY-------------NQINAQRAQLLAAVAAVGGGC 886
            .|..|.|......::||:.|.. .:.|::::             .:.:|.:.:..:....||||.
  Fly   971 NAEIGKSYMPHKSSMTTSALVA-IIIASLSFVVFLGLLYAFCHCRRKHAAKKESSSVGGGVGGGN 1034

  Fly   887 SSTVISPSSS-----------------------------------ILGGL-GKPLGMGMGMGLGM 915
            ::...:|.|:                                   ..|.| .|.:|.|.|   ||
  Fly  1035 ANATANPGSTGAKEYDLDLDASRRPSLSQDPQQSQQQPPPPPPYYPTGTLDSKDIGNGNG---GM 1096

  Fly   916 -----------------------------------GVGGTVIGSPTSLSSTATLAAHLQPAHSSG 945
                                               |:.|.|.||..:.|..       |..||:|
  Fly  1097 ELTLTALHDPDEQLNMQQQQHHSNHGQYQQPKAILGIYGGVAGSGGNNSGG-------QHPHSNG 1154

  Fly   946 VG---------------TLPP---------GLGSGGGYILNAYASGRLH-HPPGGGVPGGATHTA 985
            .|               .||.         |.|||.|:.|.|..||.|. .||...:.||::..:
  Fly  1155 YGYHVTSAIGVDSDSYQVLPSVANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCNISGGSSSNS 1219

  Fly   986 TLN---RHHHQQQQLHHHP---------------------HHQQPHHSGSSLLMGSAGS------ 1020
            .:|   :.|..:..|.:.|                     |.....::.::|..|..|:      
  Fly  1220 GINPMQQQHSARANLTNQPTIATASSTNNYNNHLNNTNIAHTTNNTNNCTTLKRGHLGNRERERE 1284

  Fly  1021 ---VMGVVGSTTTA------TTSCN--------------SSQDLDDNININA 1049
               |.....:||||      |||.|              ||.:.::|...||
  Fly  1285 RCQVTAATAATTTALATTITTTSRNAKAATTTTTLAITGSSSNSNENNYSNA 1336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IINP_001014485.3 IG_like 55..160 CDD:214653 30/116 (26%)
Ig 57..160 CDD:299845 30/116 (26%)
Ig 188..251 CDD:299845 16/71 (23%)
Ig 289..363 CDD:299845 20/173 (12%)
IG_like 289..351 CDD:214653 16/159 (10%)
Ig_2 376..460 CDD:290606 18/104 (17%)
IG_like 383..454 CDD:214653 16/91 (18%)
Ig 470..548 CDD:299845 24/97 (25%)
IG_like 481..557 CDD:214653 26/95 (27%)
fredNP_608812.3 Ig 29..126 CDD:299845
IG_like 141..228 CDD:214653 30/110 (27%)
Ig 147..228 CDD:299845 27/105 (26%)
I-set 232..313 CDD:254352 28/125 (22%)
IGc2 250..302 CDD:197706 16/71 (23%)
IG_like 323..385 CDD:214653 10/61 (16%)
IGc2 330..385 CDD:197706 9/54 (17%)
Ig_2 416..501 CDD:290606 10/84 (12%)
IG_like 418..501 CDD:214653 10/82 (12%)
I-set 505..612 CDD:254352 19/111 (17%)
Ig 526..611 CDD:143165 13/86 (15%)
IG_like 633..715 CDD:214653 24/82 (29%)
Ig 635..713 CDD:143165 23/78 (29%)
FN3 720..838 CDD:238020 25/138 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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