DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-II and syg-1

DIOPT Version :10

Sequence 1:NP_001400995.1 Gene:side-II / 3346206 FlyBaseID:FBgn0259213 Length:1067 Species:Drosophila melanogaster
Sequence 2:NP_001123159.1 Gene:syg-1 / 180555 WormBaseID:WBGene00006365 Length:730 Species:Caenorhabditis elegans


Alignment Length:676 Identity:149/676 - (22%)
Similarity:255/676 - (37%) Gaps:175/676 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 KDIDAVEGKSVSLPCPITEPLDNVYMVLWFRDNAGIPLYSFDVRDKESREQPRHWSAPEVFGSRA 119
            ||..|..|::..|.|.:......|.   |.:|:.|:   ..| |||......|:    .:.||.|
 Worm    30 KDTLAAVGETAILTCRVEHQQGPVQ---WMKDDFGL---GTD-RDKPLPGNKRY----RMVGSAA 83

  Fly   120 KFHFDSQPATLEIKDIKRHDQGIYRCRV--DFRTSQTQSFRFNLSVIILPEQPIIMDRWGRQLNG 182
            ...::     |||.::...|...:.|::  ........|.:..|:|::.|..|.|: :....|..
 Worm    84 NGEYN-----LEISNVTLFDDDDFACQISESDHAKAVVSSKAKLTVLVRPTPPKIV-KSHHSLKA 142

  Fly   183 TQLGPKQEGDDIVITCRVVGGRPQPQVRWLVNGLLVDNQNEHNSGDVIENRLLW------PSVQR 241
            .      .||.|..:|....|:|.|.:.|.:..   |...:|....:.|:|..:      |.:.:
 Worm   143 I------AGDPITQSCLSRKGKPPPTIGWAIAS---DEHGKHIVSWLGESRSKFGGIHAKPEISQ 198

  Fly   242 NDL--------------------NSVFTCQALNTQLDKPKE--------------------KSFI 266
            ..:                    :|:::..:..:.:.:|::                    .|..
 Worm   199 ETVIAHVNETTQVEEGGNNSREDSSIYSIMSNLSFIPRPEDDHKYLICISQHMTFPNKIEVDSVK 263

  Fly   267 LDMHLKPLV-------VKILEPPSSMIADRRYEVSCESSGSRP--NAIITWYKGKRQLRRTKDDI 322
            |.:...|.:       :.:.|..|:::|       | :..::|  |..|:||||.::||.|.|.:
 Worm   264 LSLRYAPQINLTVASKLPLRENGSALLA-------C-NVNAKPLDNVKISWYKGNQKLRETGDTL 320

  Fly   323 SKNSTRSELSFVPTTDDDGKSITCRAENP--NVNGLYLETMWKLNVVYPPLVTLRLGSTLTPDDI 385
            :..:.:.|        |..:.|.|.|.|.  ...|..     ||||.:    ..|:.||....::
 Worm   321 TFETLKME--------DHNRDIFCEATNEIGTTRGSI-----KLNVAF----GARIMSTSQDKEV 368

  Fly   386 KEGDDVYFECHVQSNPQWRKLLWLHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAIND 450
            .|||:.:|.|...:||. ..:.|       ....|..:|...::|.|:.:.....|||.|:| ..
 Worm   369 NEGDNAFFHCATLANPA-PAIFW-------TRGDSDEIIGHGENLTLENVRTWQQGNYNCTA-TV 424

  Fly   451 EG---ETVSNQLPLRVKYTPMCKHADRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETL 512
            ||   :.:|:.|.:|...|...|..     :.||.||..|::|||...|.....||..|  |:.:
 Worm   425 EGFRKQILSHYLHIRGPPTVSMKDE-----VSASLDEATEIICEISGRPKTNNVRWTVN--GKEI 482

  Fly   513 DVGSERFSVN------GSRSILKYTPVTDQDYGTLSCWASNEVGTQQHPCLFQ------------ 559
            :..:.|.:|:      |..||||...:.::|:|..:|.|:|.:|......|.:            
 Worm   483 NFNNGRITVHQYPKPYGKESILKIKDLKEEDFGVYNCSANNGLGFDNRGTLLKKRNILDWIVITA 547

  Fly   560 -----VVLAALPNAV-------------SNC----TVFNRTELSVDIQCIPGYDGGLPQIFVLEM 602
                 |.||.:...|             |||    :.|...:..|.::| ...||   |.|. ||
 Worm   548 KFDRMVALAIISAGVLLVSLLCCLCMCRSNCRSRKSKFIDDQSDVTVKC-EALDG---QYFP-EM 607

  Fly   603 FSTRTGITRFNLSNAEEALFSLENLD 628
            :|: :.:...:||..:.......|.|
 Worm   608 YSS-SPVDNVHLSTKDYISIPQNNPD 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IINP_001400995.1 V-set 55..163 CDD:462230 25/109 (23%)
Ig_3 190..254 CDD:464046 14/89 (16%)
Ig <292..366 CDD:472250 21/77 (27%)
Ig strand B 292..295 CDD:409418 0/2 (0%)
Ig strand C 305..309 CDD:409418 1/3 (33%)
Ig strand E 329..333 CDD:409418 1/3 (33%)
Ig strand F 343..348 CDD:409418 2/4 (50%)
Ig strand G 359..362 CDD:409418 0/2 (0%)
Ig 382..457 CDD:472250 19/77 (25%)
Ig strand B 391..395 CDD:409405 1/3 (33%)
Ig strand C 405..409 CDD:409405 0/3 (0%)
Ig strand E 428..432 CDD:409405 1/3 (33%)
Ig strand F 442..447 CDD:409405 3/4 (75%)
Ig 486..554 CDD:409353 22/73 (30%)
Ig strand B 486..490 CDD:409353 1/3 (33%)
Ig strand C 500..504 CDD:409353 1/3 (33%)
Ig strand E 526..530 CDD:409353 3/3 (100%)
Ig strand F 540..545 CDD:409353 1/4 (25%)
syg-1NP_001123159.1 Ig 24..124 CDD:472250 25/109 (23%)
Ig strand B 40..44 CDD:409353 1/3 (33%)
Ig strand C 52..56 CDD:409353 1/6 (17%)
Ig strand E 87..91 CDD:409353 1/8 (13%)
Ig strand F 101..106 CDD:409353 1/4 (25%)
Ig strand G 117..120 CDD:409353 1/2 (50%)
Ig 145..267 CDD:472250 17/124 (14%)
Ig strand B 149..152 CDD:409353 0/2 (0%)
Ig strand C 162..184 CDD:409353 4/24 (17%)
Ig strand E 229..233 CDD:409353 0/3 (0%)
Ig strand F 243..248 CDD:409353 0/4 (0%)
Ig strand G 259..262 CDD:409353 0/2 (0%)
IG_like 283..353 CDD:214653 24/90 (27%)
Ig_3 358..423 CDD:464046 20/73 (27%)
IG_like 450..535 CDD:214653 27/86 (31%)
Ig strand B 458..462 CDD:409353 1/3 (33%)
Ig strand C 471..476 CDD:409353 1/4 (25%)
Ig strand E 502..506 CDD:409353 3/3 (100%)
Ig strand F 516..521 CDD:409353 1/4 (25%)

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