DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vmat and TPO2

DIOPT Version :10

Sequence 1:NP_001014525.1 Gene:Vmat / 3346192 FlyBaseID:FBgn0260964 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_011654.1 Gene:TPO2 / 853039 SGDID:S000003370 Length:614 Species:Saccharomyces cerevisiae


Alignment Length:665 Identity:125/665 - (18%)
Similarity:217/665 - (32%) Gaps:240/665 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TDAGNGGPRKHTQSTAPQKQSEISETTSFTVNANTTTNSQQQQIPGGPASNTPSKNPFKQQLDSN 69
            |...|..|.::|..| |.....::...|....|:..:.::.:|: ...|:|:.|..  |::::..
Yeast    70 TAKNNIFPEEYTMET-PSGLVPVATLQSMGRTASALSRTRTKQL-NRTATNSSSTG--KEEMEEE 130

  Fly    70 Q------QNGNMEPDCGIMGVGKEPPVPPPPTYQSQTYAGRQAPPPADQYREEDPRAAGSWAAAK 128
            :      |:|..|.|               |..:..|:.            ..||....:|   .
Yeast   131 ETEEREDQSGENELD---------------PEIEFVTFV------------TGDPENPHNW---P 165

  Fly   129 SWMVSWRGSNRLVLVIVAIALLLDNMLLTTVVPIIPEFLYDIRHPDAPLDSFPRTPLTSNVPPPP 193
            || |.|..:..|.::::.:|.                                            
Yeast   166 SW-VRWSYTVLLSILVICVAY-------------------------------------------- 185

  Fly   194 TPCPCNKDGSEAAPLEISTISPEENETYYRELEERHNELVGETVEVGLLFASKAFVQLLVNPIV- 257
                    ||......:.|:            |::::  ||  :|..:|..|...:...:.|:: 
Yeast   186 --------GSACISGGLGTV------------EKKYH--VG--MEAAILSCSLMVIGFSLGPLIW 226

  Fly   258 GPLTHRIGYSIPMFAGFVIMFLSTIIFAFGRSYLVLFVARALQGIGSSCSSVSGM----GMLADR 318
            .|::...|..:..|....:..:..|..|...:...|...|.|.|:.||    ||:    |.:||.
Yeast   227 SPVSDLYGRRVAYFVSMGLYVIFNIPCALAPNLGCLLACRFLCGVWSS----SGLCLVGGSIADM 287

  Fly   319 FTDDKERGNAMGIALGGLALGVLIGP---------------------PFGGVMYEFVGKS----- 357
            |..: .||.|:........:|.::||                     .|.|||: .:..:     
Yeast   288 FPSE-TRGKAIAFFAFAPYVGPVVGPLVNGFISVSTGRMDLIFWVNMAFAGVMW-IISSAIPETY 350

  Fly   358 APFLI---LAALALGDG-----------------LLQLFMLQPSIQKAETEPPSLKS------LI 396
            ||.::   .|.|....|                 :::..:|:| :..|.|||..:.:      :.
Yeast   351 APVILKRKAARLRKETGNPKIMTEQEAQGVSMSEMMRACLLRP-LYFAVTEPVLVATCFYVCLIY 414

  Fly   397 SDPYILIAAGAITFANMGIAMLEPSLPLWMVDNMGATRWEQGVAFLPASISYL--IGTNLFGP-- 457
            |..|....|..:.|..:          ....||:      .|:.|:|..|..|  :.|..:..  
Yeast   415 SLLYAFFFAFPVIFGEL----------YGYKDNL------VGLMFIPIVIGALWALATTFYCENK 463

  Fly   458 ----------------LGHKIGRWFAACLGLIIIGGCLIFIPMATSITHLI---IPNAGLGFAIG 503
                            ||.|||..||| :.|.|:|        ||:..|:|   ..:|||.|..|
Yeast   464 YLQIVKQRKPTPEDRLLGAKIGAPFAA-IALWILG--------ATAYKHIIWVGPASAGLAFGFG 519

  Fly   504 MVDSSMMPEL-GYLVD----IRHSAVYGSVY--ALGDVAFCVGFAVGPALSGSLVKSIGFEWMLF 561
            ||  .:...| .|::|    ...||:...|:  :.|..||       |..:..:...:...|   
Yeast   520 MV--LIYYSLNNYIIDCYVQYASSALATKVFLRSAGGAAF-------PLFTIQMYHKLNLHW--- 572

  Fly   562 GIAILCFMYAPLLTL 576
            |..:|.|:...::.|
Yeast   573 GSWLLAFISTAMIAL 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VmatNP_001014525.1 MFS_SLC18A1_2_VAT1_2 141..578 CDD:340942 98/523 (19%)
TPO2NP_011654.1 MFS_Tpo1_MDR_like 173..599 CDD:340881 99/527 (19%)

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