DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vmat and slc18a3a

DIOPT Version :10

Sequence 1:NP_001014525.1 Gene:Vmat / 3346192 FlyBaseID:FBgn0260964 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_001071018.1 Gene:slc18a3a / 559347 ZFINID:ZDB-GENE-060929-990 Length:513 Species:Danio rerio


Alignment Length:465 Identity:181/465 - (38%)
Similarity:276/465 - (59%) Gaps:51/465 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 RLVLVIVAIALLLDNMLLTTVVPIIPEFLYDIRHPDAPLDSFPRTPLTSNVPPPPTPCPCNKDGS 203
            |::||||.:||||||||...:|||:|::|       |.|:|                     :..
Zfish    39 RIILVIVCVALLLDNMLYMVIVPIVPDYL-------AHLES---------------------ESE 75

  Fly   204 EAAPLEISTISPEENETYYRELEERHNELVGETVEVGLLFASKAFVQLLVNPIVGPLTHRIGYSI 268
            :|.....|:|:..:||.:              .:::|:||||||.:||||||:.|....|:||.|
Zfish    76 QAHVKGNSSINITQNENF--------------DLQIGVLFASKAILQLLVNPLTGTFIDRVGYDI 126

  Fly   269 PMFAGFVIMFLSTIIFAFGRSYLVLFVARALQGIGSSCSSVSGMGMLADRFTDDKERGNAMGIAL 333
            |:..|..|||:||.||||..:|..||:||:|||:||:.:..||:.|:||::.::.||..|:||||
Zfish   127 PLLIGLSIMFVSTCIFAFAENYATLFMARSLQGLGSAFADTSGIAMIADKYAEESERSRALGIAL 191

  Fly   334 GGLALGVLIGPPFGGVMYEFVGKSAPFLILAALALGDGLLQLFMLQPSIQKAETEPP---SLKSL 395
            ..::.|.|..||||||:|||.||..||:.||.:.|.||:|.|.:|:|...:.....|   .:..|
Zfish   192 AFISFGSLAAPPFGGVLYEFAGKRFPFIALACVCLADGILCLTVLKPFSSRTRENMPVGTPIYKL 256

  Fly   396 ISDPYILIAAGAITFANMGIAMLEPSLPLWMVDNMGATRWEQGVAFLPASISYLIGTNLFGPLGH 460
            :.||||.:.|||:|..|:.:|.|||::..||.:.|.|::|:.|:.:|||...:::|..|...|..
Zfish   257 MIDPYIAVVAGALTTCNIPLAFLEPTIANWMEETMNASQWQIGITWLPAFFPHILGVYLTVKLAA 321

  Fly   461 KIG--RWFAACLGLIIIGGCLIFIPMATSITHLIIPNAGLGFAIGMVDSSMMPELGYLVDIRHSA 523
            |..  :||...||::|||.....:|...:...||||..|:.|.|.:||::::|.|.:|||:||.:
Zfish   322 KYPHLQWFYGALGMVIIGASSCIVPACKNFEQLIIPLCGVCFGIALVDTALLPTLAFLVDVRHVS 386

  Fly   524 VYGSVYALGDVAFCVGFAVGPALSGSLVKSIGFEWMLFGIAILCFMYAPLLTLLKN----PPTSD 584
            |||||||:.|:::||.:|:||.::|.:|..:||..:..|:.:...:|||.|.||:|    .|:..
Zfish   387 VYGSVYAIADISYCVAYALGPIVAGKIVHDLGFVQLNLGMGLANVLYAPALLLLRNVSLMKPSHS 451

  Fly   585 EKKVRMAREA 594
            |:.:.:...|
Zfish   452 ERNMLLEEGA 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VmatNP_001014525.1 MFS_SLC18A1_2_VAT1_2 141..578 CDD:340942 175/441 (40%)
slc18a3aNP_001071018.1 MFS_SLC18A3_VAChT 42..441 CDD:340941 175/440 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 475..513
Blue background indicates that the domain is not in the aligned region.

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