DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vmat and rtet

DIOPT Version :10

Sequence 1:NP_001014525.1 Gene:Vmat / 3346192 FlyBaseID:FBgn0260964 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_524429.1 Gene:rtet / 42500 FlyBaseID:FBgn0028468 Length:477 Species:Drosophila melanogaster


Alignment Length:461 Identity:107/461 - (23%)
Similarity:179/461 - (38%) Gaps:122/461 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 VLVIVAIALLLDNMLLTTVVPIIPEFLYDIRHPDAPLDSFPRTPLTSNVPPPPTPCPCNKDGSEA 205
            ::.|:.::||.|.:..|.::|::|..|...|..|:   |.....||..|                
  Fly    49 MIYIIFVSLLFDLLAFTIILPLLPSLLEHYRQNDS---SGLYAVLTDRV---------------- 94

  Fly   206 APLEISTISPEENETYYREL---EERH-NELVGETVEVGLLFASKAFVQLLVNPIVGPLTHRIGY 266
                          .::::|   .:|: :.|.|     |.|.:..:|:|.:.:||||.|:...|.
  Fly    95 --------------RWFQQLLGAPDRYISVLFG-----GFLGSMFSFLQFVASPIVGGLSDYYGR 140

  Fly   267 SIPMFAGFVIMFLSTIIFAFGRSYLVLFVARALQGIGSSCSSVSGMGMLADRFTDDKERGNAMGI 331
            ...:.|....:.||.:|:|...::.:..:||.:.||.....|:. |.::.| .:..|.||.  |:
  Fly   141 KPVLLACASGIALSYLIWACSSNFALFVLARFVGGISKGNISLC-MSVITD-VSSVKTRGR--GM 201

  Fly   332 ALGGLA--LGVLIGPPFGGVMYEFVGKSA------PFLILAALALGDGLLQLFMLQPSIQKAETE 388
            ||.|:|  ||.::||..|.:...|..||.      |.|:...||:||.::....|:.::.| |..
  Fly   202 ALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFVLPSLLAFGLAVGDLVVLACCLRETLPK-EKR 265

  Fly   389 PPSLKSLISDPYILIAAGAI-TFA--------------NMGIAM---------LEPSLPLWMVDN 429
            ...:.|.:|....|:...|| .||              ::|:..         ||.::...|...
  Fly   266 VKEISSALSYGLQLLNFSAIFRFAAIKNVPKKDIAALRSIGLVYFLYLFLYSGLEFTVTFLMYHK 330

  Fly   430 MGATRWEQGVAFLPASISYLIGTNLFGPLGHKIGRWFAACLGLIIIGGCLIFIPMATSITHLIIP 494
            .|.|..:|...||...:   |.|.|.|.:..::..        ..|.|..||      ..:||:|
  Fly   331 FGYTSMDQAKMFLTTGV---IMTLLQGSVVRRLPE--------AKIKGYAIF------SLYLIVP 378

  Fly   495 NAGLGF-AIGMVDSSMMPELG---------------------YLVDIRHSAVYGSVYALGDVAFC 537
                .| .:|:.:.|.|...|                     |..|.:..:|.|...:||.:|..
  Fly   379 ----AFVVVGLAEGSRMLYAGMTLFAISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRSLGALARA 439

  Fly   538 VGFAVG 543
            :|..||
  Fly   440 LGPVVG 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VmatNP_001014525.1 MFS_SLC18A1_2_VAT1_2 141..578 CDD:340942 107/461 (23%)
rtetNP_524429.1 MFS_MFSD10 50..476 CDD:340947 107/460 (23%)

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