DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vmat and LOC100495897

DIOPT Version :10

Sequence 1:NP_001014525.1 Gene:Vmat / 3346192 FlyBaseID:FBgn0260964 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_002932791.2 Gene:LOC100495897 / 100495897 XenbaseID:XB-GENE-29082875 Length:467 Species:Xenopus tropicalis


Alignment Length:466 Identity:177/466 - (37%)
Similarity:274/466 - (58%) Gaps:16/466 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 KSWMVSWRGSNRLVLVIVAIALLLDNMLLTTVVPIIPEFLYDIRHPDAPLDSFPRTPLTSNVPPP 192
            :.|:...|.|..|||::|.:||.:|.:|.|.:.||:|..|..        .:...:.:.||....
 Frog     7 RQWLQKTRESRILVLIVVTVALFVDCILNTVIAPILPTLLIG--------KNTSNSSVVSNYTFT 63

  Fly   193 PTPCPCNKDGSEAAPLEISTISPEENETYYRELEERHNELVGETVEVGLLFASKAFVQLLVNPIV 257
            ..|     |.|.....::...:..::...|.:.:|..:   |:...:|||.|.|..:|::.||||
 Frog    64 LLP-----DNSSKGIYQLQNANGTQDGECYTKGKENSD---GQDFRIGLLLAFKGMLQIVANPIV 120

  Fly   258 GPLTHRIGYSIPMFAGFVIMFLSTIIFAFGRSYLVLFVARALQGIGSSCSSVSGMGMLADRFTDD 322
            |.||:|.||..|:..||.::|.||:::|||..|:.|.|||.|||||||.::|.|:.:||:.|.||
 Frog   121 GVLTNRFGYDAPLLVGFAVVFFSTLMYAFGEQYVFLCVARGLQGIGSSLTTVPGLALLANTFPDD 185

  Fly   323 KERGNAMGIALGGLALGVLIGPPFGGVMYEFVGKSAPFLILAALALGDGLLQLFMLQPSIQKAET 387
            :||..||.|:..|||:|.|:|.|||.:|..|.|||:||.:|||:.|.||.|:|.:|:|.......
 Frog   186 EERAKAMAISTSGLAVGALVGAPFGSLMNGFFGKSSPFYVLAAVTLLDGALRLCILRPKFSPGSI 250

  Fly   388 EPPSLKSLISDPYILIAAGAITFANMGIAMLEPSLPLWMVDNMGATRWEQGVAFLPASISYLIGT 452
            ......:|::|||||:.........:..::|:..:|:.|:::|.|..::.|:||:||.::.::..
 Frog   251 PATPYLTLLADPYILVPVVGYFLNKLNSSILQAIVPVRMMEHMCAPSYQLGLAFVPAMLTTILTL 315

  Fly   453 NLFGPLGHKIGRWFAACLGLIIIGGCLIFIPMATSITHLIIPNAGLGFAIGMVDSSMMPELGYLV 517
            |.|..|..|.|||....||.||.|..:|.:|:|.:|..||.|:..||....:|.:|:||.:.||:
 Frog   316 NGFAILSLKWGRWLCLMLGFIIQGIGIICLPLAANIFGLIGPSIVLGIGTALVGASIMPLMAYLI 380

  Fly   518 DIRHSAVYGSVYALGDVAFCVGFAVGPALSGSLVKSIGFEWMLFGIAILCFMYAPLLTLLKNPPT 582
            |:||::|||.|||:.|.|.|:|||:||...|::..:|||.|::..:.:|..:||||..||:|...
 Frog   381 DLRHTSVYGGVYAITDAALCLGFAIGPLFGGAIASAIGFTWVMVILCVLLIIYAPLFILLRNVSG 445

  Fly   583 SDEKKVRMARE 593
            .||||..:.:|
 Frog   446 KDEKKPILNQE 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VmatNP_001014525.1 MFS_SLC18A1_2_VAT1_2 141..578 CDD:340942 166/436 (38%)
LOC100495897XP_002932791.2 MFS 20..441 CDD:475125 166/436 (38%)

Return to query results.
Submit another query.