DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment U3-55K and AT5G51980

DIOPT Version :9

Sequence 1:	NP_001014529.1	Gene:	U3-55K / 3346176	FlyBaseID:	FBgn0053505	Length:	484	Species:	Drosophila melanogaster
Sequence 2:	NP_001318784.1	Gene:	AT5G51980 / 835273	AraportID:	AT5G51980	Length:	437	Species:	Arabidopsis thaliana

Alignment Length:	323	Identity:	69/323 - (21%)
Similarity:	124/323 - (38%)	Gaps:	98/323 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly   159 HHTPICALALSPDGKFLYTGAKSQFLLKW------CT-------ETGKVLEKS------------ 198
            |...:..:||......||||:|.:.|..|      ||       |.|.||.:.
plant   150 HEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVK 214

  Fly   199 --DVLSHREEPETGKKRRSHVISICLSSDMKYLALAEGGPHIQIW----CPQTMKHIKTLKGHRD 257
              ::.::.::..:|..  ..|.|:.:.:|:.:....:|.  |..|    .....:...:|.||
plant   215 AWNIETNADQSLSGPV--GQVYSLVVGTDLLFAGTQDGS--ILAWRYNAATNCFEPSASLTGH-- 273

  Fly   258 SVAGLVFRKGTHDLYSAAKDRSVKIWSLDEMAYVESLFGHQTAVTSIDALSRERAITAGGSDCSL 322
            ::|.:....|.:.|||.:.|:::|:||||.:..:::|..|.:.|.|:  :..::.:.:...|.::
plant   274 TLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSL--ICWDQFLLSCSLDNTV 336

  Fly   323 RIWKITEESQL-IYNGHKDSIECVKYINDEHFVSGGMDGAIGLWSALKKKPI----C---TTQL- 378
            :||...|...| :...||          :||    |:....|:..| :.||:    |   |.:|
plant   337 KIWAAIEGGNLEVTYTHK----------EEH----GVLALCGVHDA-EAKPVLLCACNDNTLRLY 386

  Fly   379 ------------------AHGVGENGVANWITAIAVVVNTDLVATGSCDGCVRLWQ--TNPNA 421
                              |..:|..|:               ..||...|.|::|:  |.|.|
plant   387 DLPSFTERGKIFAKQEIRAIQIGPGGI---------------FFTGDGTGQVKVWKWCTEPTA 434

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
U3-55K	NP_001014529.1	Upf2	55..>125	CDD:281974
		WD40	<150..484	CDD:225201	69/323 (21%)
		WD40	156..416	CDD:295369	65/314 (21%)
		WD40 repeat	163..203	CDD:293791	15/66 (23%)
		WD40 repeat	218..254	CDD:293791	6/39 (15%)
		WD40 repeat	259..295	CDD:293791	11/35 (31%)
		WD40 repeat	302..336	CDD:293791	6/34 (18%)
		WD40 repeat	342..379	CDD:293791	10/62 (16%)
		WD40 repeat	391..431	CDD:293791	8/33 (24%)
		WD40 repeat	436..461	CDD:293791
AT5G51980	NP_001318784.1	zf_CCCH_4	115..133	CDD:408151
		WD40	143..427	CDD:421866	65/314 (21%)
		WD40 repeat	196..228	CDD:293791	3/31 (10%)
		WD40 repeat	233..271	CDD:293791	6/39 (15%)
		WD40 repeat	279..311	CDD:293791	10/31 (32%)
		WD40 repeat	318..352	CDD:293791	6/35 (17%)
		WD40 repeat	359..399	CDD:293791	7/40 (18%)
		WD40 repeat	403..426	CDD:293791	7/37 (19%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR19865
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100