Protein Alignment U3-55K and rrp9

DIOPT Version :10

• Sequence 1: NP_001014529.1
• Gene: U3-55K / 3346176
• FlyBaseID: FBgn0053505
• Length: 484
• Species: Drosophila melanogaster
• Sequence 2: NP_001112367.2
• Gene: rrp9 / 402808
• ZFINID: ZDB-GENE-060427-1
• Length: 471
• Species: Danio rerio
• Alignment Length: 487
• Identity: 203/487 - (41%)
• Similarity: 305/487 - (62%)
• Gaps: 33/487 - (6%)

  Fly     3 SSFFLKPGAKGTKKRKNPAATTKGKPLKKGG-KPGKSTPAAGGPVPKKQRRPKEEDEEIASDDEE 66
            ||||:       ||:...:||.||...:|.. ..||.         :.:|..|..:|||:||.|.
Zfish     2 SSFFI-------KKKLVSSATNKGDLKRKSNTDDGKG---------RSKRFSKRMNEEISSDSEN 50

  Fly    67 YNSDLGGDDNTLAFSSDEGE-EETPQDKRLRLAKQYLSEIEKQEAERAEDREL-AQSVEQRLQTE 129
            .::|.|....    .::|.| |||.|:|:|||||.||.::.::|.::||:... |..:..|||.:
Zfish    51 ESADPGRKQQ----ENEEDEIEETAQEKKLRLAKLYLDQLREEEDKKAEEESFEADLIAGRLQED 111

  Fly   130 YLDSVGKLRRNIAGSLKACESSRILKHKLHHTPICALALSPDGKFLYTGAKSQFLLKWCTETGKV 194
            .|:..|||:|.||..|.|.:.:.|...:.|..|:..|.::||.|.:::.:|...::||..|:||.
Zfish   112 VLEQKGKLQRLIAKELIAPDPAEIRLLRGHKLPVTCLVITPDEKHIFSASKDCSIIKWDVESGKK 176

  Fly   195 LEKSDVLSHREEPETGKKRRSHVISICLSSDMKYLALAEGGPHIQIWCPQTMKHIKTLKGHRDSV 259
            ::|  :...|:..|  ....:|::.:.:|||.||||..:...||.||.|:|.||:....|||.::
Zfish   177 VQK--IAGGRKGTE--DCHTAHILCMAISSDGKYLASGDMNKHIMIWDPETCKHLFKFTGHRGAI 237

  Fly   260 AGLVFRKGTHDLYSAAKDRSVKIWSLDEMAYVESLFGHQTAVTSIDALSRERAITAGGSDCSLRI 324
            :||.||:|||.||||:.|||:|:||:||.||||:|||||.|:|.:|.|||||.:|.||.|.::|:
Zfish   238 SGLAFRRGTHTLYSASHDRSIKVWSVDENAYVETLFGHQDAITGLDCLSRERCVTTGGRDRTVRV 302

  Fly   325 WKITEESQLIYNGHKDSIECVKYINDEHFVSGGMDGAIGLWSALKKKPICTTQLAHGV-GENGVA 388
            |||.|||||:::||:.||:||:.||:||.|:||.|||:.:|:..||||:.:.:.|||| |..|:.
Zfish   303 WKIAEESQLVFHGHEGSIDCVQLINEEHMVTGGDDGAVSIWTVNKKKPLSSVKQAHGVRGSAGLE 367

  Fly   389 N--WITAIAVVVNTDLV---ATGSCDGCVRLWQTNPNARKMNLIQSISIAGFINGLAFNADGSKL 448
            .  |::::|.:.|:|.|   |:||.:..|:||:.....|.:.|:.|:.:.||:|.|.|:..|..|
Zfish   368 QPYWVSSVAALHNSDTVASGASGSHNSSVQLWKCGQGFRGLELLFSVPVNGFVNSLKFSNSGKFL 432

  Fly   449 FVATGQEHRLGRWWRLKEAKNQVVVLDVKLQS 480
            ....|||||||||||:|||||.:.::.:|.|:
Zfish   433 VAGVGQEHRLGRWWRIKEAKNGLYIIPLKRQA 464

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
U3-55K	NP_001014529.1	WD40	156..416	CDD:475233	120/265 (45%)
		WD40 repeat	163..203	CDD:293791	11/39 (28%)
		WD40 repeat	218..254	CDD:293791	15/35 (43%)
		WD40 repeat	259..295	CDD:293791	23/35 (66%)
		WD40 repeat	302..336	CDD:293791	20/33 (61%)
		WD40 repeat	342..379	CDD:293791	18/36 (50%)
		WD40 repeat	391..431	CDD:293791	13/42 (31%)
		YncE	<420..477	CDD:442618	26/56 (46%)
		WD40 repeat	436..461	CDD:293791	12/24 (50%)
rrp9	NP_001112367.2	None