DRSC/TRiP Functional Genomics Resources

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Protein Alignment U3-55K and rrp9

DIOPT Version :9

Sequence 1:NP_001014529.1 Gene:U3-55K / 3346176 FlyBaseID:FBgn0053505 Length:484 Species:Drosophila melanogaster
Sequence 2:XP_002935676.2 Gene:rrp9 / 100497378 XenbaseID:XB-GENE-966597 Length:493 Species:Xenopus tropicalis


Alignment Length:513 Identity:196/513 - (38%)
Similarity:296/513 - (57%) Gaps:66/513 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SSFFLKPGAKGTKKRKNPAATTKGKPLKKGGKPGKSTPAAGGPVPKKQRRPKEEDEEIASDDEEY 67
            |..|:|..:..|.:|:           :..|...::|         .|:|.|.:|..:.   ||.
 Frog     2 SGLFIKKKSAVTPRRR-----------RAEGNDAEAT---------SQKRKKTKDTHLR---EEI 43

  Fly    68 NSDLGGDDNTLAFS-----SDEGE--EETPQDKRLRLAKQYLSEIEKQEAERAEDRELAQ-SVEQ 124
            .||   .|..:|.:     .||.|  |||.|:|:|||||:||.::::||.|:.||.:..| ::..
 Frog    44 ESD---SDTEIAPARTKPKQDEEEYLEETAQEKKLRLAKEYLKQLQQQEEEQKEDEDQDQNAIAN 105

  Fly   125 RLQTEYLDSVGKLRRNIAGSLKACESSRILKHKLHHTPICALALSPDGKFLYTGAKSQFLLKWCT 189
            |||.:.|:..|:|:|.:|..|...|.|.|...:.|..||..|.:|||..:|::|:|...::||..
 Frog   106 RLQEDVLEQRGRLQRPLAKELLPPEPSEIRLLRGHQGPITCLVISPDDSYLFSGSKDCSIIKWSV 170

  Fly   190 ETGKVLEKSDVLSHREEPE-TGKKRRSHVISICLSSDMKYLALAEGGPHIQIWCPQTMKHIKTLK 253
            ..||.:.|  :...|:..| |......||:.:.||||.||||..:....|.||.|.|.:::...:
 Frog   171 SDGKKMHK--IPGGRKGTESTHVGHTGHVLCMALSSDGKYLASGDRNKLIFIWDPVTCQNLHKFQ 233

  Fly   254 GHRDSVAGLVFRKGTHDLYSAAKDRSVKIWSLDEMAYVESLFGHQTAVTSIDALSRERAITAGGS 318
            ||||:|:||.|:||||.|:||:.|||||:|::.|.||:|:|||||..:|.:|:|||||.:|.||.
 Frog   234 GHRDAVSGLSFQKGTHQLFSASHDRSVKVWNVAENAYIETLFGHQDVITGLDSLSRERCVTVGGR 298

  Fly   319 DCSLRIWKITEESQLIYNGHKD--------------------------SIECVKYINDEHFVSGG 357
            |.::|||||.||:||:::||::                          ||:||:.||:||.|:|.
 Frog   299 DGTMRIWKIAEETQLVFSGHEESSLKGESLSHSVTSVSPQIGGPARRGSIDCVRLINEEHVVTGA 363

  Fly   358 MDGAIGLWSALKKKPICTTQLAHGV-GENGVAN--WITAIAVVVNTDLVATGSCDGCVRLWQTNP 419
            .||::.||:..||||:...:.|||. |:.|:..  ||.::|..:|:|:||:||.||.|.:|:...
 Frog   364 DDGSLALWTVGKKKPLTQVKCAHGSHGDAGLEQPYWICSVAAALNSDVVASGSHDGFVHVWRCGE 428

  Fly   420 NARKMNLIQSISIAGFINGLAFNADGSKLFVATGQEHRLGRWWRLKEAKNQVVVLDVK 477
            ..|.::.:.:|.:.||||.|.|::..:.|....|||||||||||.|||:|.:.::.:|
 Frog   429 GFRSLSPLWTIPLVGFINSLQFSSSANFLVAGVGQEHRLGRWWRKKEARNGLYIIPIK 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U3-55KNP_001014529.1 Upf2 55..>125 CDD:281974 28/77 (36%)
WD40 <150..484 CDD:225201 148/358 (41%)
WD40 156..416 CDD:295369 120/289 (42%)
WD40 repeat 163..203 CDD:293791 13/39 (33%)
WD40 repeat 218..254 CDD:293791 13/35 (37%)
WD40 repeat 259..295 CDD:293791 21/35 (60%)
WD40 repeat 302..336 CDD:293791 20/33 (61%)
WD40 repeat 342..379 CDD:293791 17/36 (47%)
WD40 repeat 391..431 CDD:293791 13/39 (33%)
WD40 repeat 436..461 CDD:293791 12/24 (50%)
rrp9XP_002935676.2 WD40 133..460 CDD:238121 131/328 (40%)
WD40 repeat 144..192 CDD:293791 16/49 (33%)
WD40 repeat 198..234 CDD:293791 13/35 (37%)
WD40 repeat 239..275 CDD:293791 21/35 (60%)
WD40 repeat 282..316 CDD:293791 20/33 (61%)
WD40 repeat 323..383 CDD:293791 18/59 (31%)
WD40 repeat 400..440 CDD:293791 13/39 (33%)
WD40 repeat 445..470 CDD:293791 12/24 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10370
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3452
Inparanoid 1 1.050 343 1.000 Inparanoid score I2286
OMA 1 1.010 - - QHG54739
OrthoDB 1 1.010 - - D453052at33208
OrthoFinder 1 1.000 - - FOG0004346
OrthoInspector 1 1.000 - - oto103123
Panther 1 1.100 - - LDO PTHR19865
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3065
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.080

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