Sequence 1: | NP_001247206.1 | Gene: | Gfrl / 3346162 | FlyBaseID: | FBgn0262869 | Length: | 1279 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_571806.1 | Gene: | gfra1b / 79377 | ZFINID: | ZDB-GENE-010226-3 | Length: | 481 | Species: | Danio rerio |
Alignment Length: | 329 | Identity: | 75/329 - (22%) |
---|---|---|---|
Similarity: | 111/329 - (33%) | Gaps: | 80/329 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 60 PTDKSLSSATTALETDLAIGRSGSTIKGVVAIL---NCILARQLCFEDPSCSAILEIIPRVCGPI 121
Fly 122 PVSCSTVTVT------KCQAALRTLQAFQFFRPT----------CLCKEPGMDPDCNHFRDFLFD 170
Fly 171 HPCGFVLKKAEKDPYPIDALPTCNHALSVCQQERKCLKLFEDFKTHCKVRDNK---CKMENRDAC 232
Fly 233 HDSWTNL---------------RLSPMFGCICPNN-HMKKRCDRIFNIVNHNPCVDRLI-FFPNG 280
Fly 281 LP-KLKQPRPKAKPRPKPKPKSKPKPRQRHHGMNGTELMTNNIEYHDEP-----NGLSDPEDEAN 339
Fly 340 ETVD 343 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Gfrl | NP_001247206.1 | GDNF | 94..173 | CDD:280506 | 21/94 (22%) |
GDNF | 193..270 | CDD:197975 | 21/95 (22%) | ||
GDNF | 641..727 | CDD:197975 | |||
GDNF | 751..832 | CDD:280506 | |||
gfra1b | NP_571806.1 | GDNF | 41..123 | CDD:197975 | |
GDNF | 162..245 | CDD:280506 | 21/94 (22%) | ||
GDNF | 255..349 | CDD:280506 | 21/95 (22%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C170584248 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10269 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.940 |