DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gfrl and Gfra4

DIOPT Version :10

Sequence 1:NP_001247206.1 Gene:Gfrl / 3346162 FlyBaseID:FBgn0262869 Length:1279 Species:Drosophila melanogaster
Sequence 2:XP_006235103.1 Gene:Gfra4 / 66023 RGDID:620503 Length:347 Species:Rattus norvegicus


Alignment Length:223 Identity:52/223 - (23%)
Similarity:83/223 - (37%) Gaps:49/223 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   641 CHTALDTCREDPSCSSSLQPMLTHCELHR--------CNRNACMSSLQAFY-KGPHEDLNLDIAF 696
            |..|.:.|..|..|.......:..| |.|        |.|:.|..:|:.|: :|| ..|...:.|
  Rat    98 CVEAAEACTADEQCQQLRSEYVAQC-LGRAGWRGPGSCVRSRCRRALRRFFARGP-PALTHALLF 160

  Fly   697 CLCKKTSSQQNGNGNRHDMCMIAQEKLHPVCAQRPPDNSNPASSNGIYYHPPPACHVVADSCKED 761
            |.|:                       .|.||:|......||.:.......||:|....|.|:..
  Rat   161 CGCE-----------------------GPACAERRRQTFAPACAFSGPQLAPPSCLKPLDRCERS 202

  Fly   762 RECRLKLEYYEQACAVDSVTKKCAGRPSG--CRTAMIGILGTMLRTT------------CACQGT 812
            |.||.:|..::.:||....::.......|  |..|..|::||::...            |.|:.:
  Rat   203 RRCRPRLFAFQASCAPAPGSRDGCPEEGGPRCLRAYAGLVGTVVTPNYLDNVSARVAPWCGCEAS 267

  Fly   813 DPQHLYQCVGWRRLLWMNPCVVEAQKDF 840
            ..:. .:|..:|:|...|||:..|.:.|
  Rat   268 GNRR-EECEAFRKLFTRNPCLDGAIQAF 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GfrlNP_001247206.1 GDNF 94..173 CDD:460537
GDNF 193..270 CDD:460537
GDNF 641..727 CDD:197975 20/94 (21%)
GDNF 751..832 CDD:460537 21/94 (22%)
Gfra4XP_006235103.1 GDNF 98..180 CDD:460537 24/106 (23%)
GDNF 192..286 CDD:460537 21/94 (22%)
Blue background indicates that the domain is not in the aligned region.

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