Sequence 1: | NP_001247206.1 | Gene: | Gfrl / 3346162 | FlyBaseID: | FBgn0262869 | Length: | 1279 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006235103.1 | Gene: | Gfra4 / 66023 | RGDID: | 620503 | Length: | 347 | Species: | Rattus norvegicus |
Alignment Length: | 223 | Identity: | 52/223 - (23%) |
---|---|---|---|
Similarity: | 83/223 - (37%) | Gaps: | 49/223 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 641 CHTALDTCREDPSCSSSLQPMLTHCELHR--------CNRNACMSSLQAFY-KGPHEDLNLDIAF 696
Fly 697 CLCKKTSSQQNGNGNRHDMCMIAQEKLHPVCAQRPPDNSNPASSNGIYYHPPPACHVVADSCKED 761
Fly 762 RECRLKLEYYEQACAVDSVTKKCAGRPSG--CRTAMIGILGTMLRTT------------CACQGT 812
Fly 813 DPQHLYQCVGWRRLLWMNPCVVEAQKDF 840 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Gfrl | NP_001247206.1 | GDNF | 94..173 | CDD:280506 | |
GDNF | 193..270 | CDD:197975 | |||
GDNF | 641..727 | CDD:197975 | 20/94 (21%) | ||
GDNF | 751..832 | CDD:280506 | 21/94 (22%) | ||
Gfra4 | XP_006235103.1 | GDNF | 98..180 | CDD:280506 | 24/106 (23%) |
GDNF | 192..286 | CDD:280506 | 21/94 (22%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166343948 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10269 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.940 |