DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gfrl and Gfrl

DIOPT Version :10

Sequence 1:NP_001247206.1 Gene:Gfrl / 3346162 FlyBaseID:FBgn0262869 Length:1279 Species:Drosophila melanogaster
Sequence 2:XP_061497849.1 Gene:Gfrl / 5667534 VectorBaseID:AGAMI1_000291 Length:1210 Species:Anopheles gambiae


Alignment Length:1340 Identity:626/1340 - (46%)
Similarity:755/1340 - (56%) Gaps:340/1340 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LWVVLFGGALHLAQ--------GSEFPERECCDLTTTSTVGPLPMPPAALPTDK-SLSSA----- 68
            |.|.|.|.||.:.|        |||||||||||........|.|:|..|.||.. |.||:     
Mosquito    57 LLVALLGPALEVRQGPSTTGVSGSEFPERECCDPVYPPMPDPDPVPGPAYPTTTISTSSSFQTGQ 121

  Fly    69 -----------------TTALETDLA-------------------IGRSGSTIKGVVAILNCILA 97
                             :||:..:|.                   ||.|||.||..:||||||||
Mosquito   122 SGIGGGGLIGGGTGAGGSTAVGNELGGGLIGTGSGSQLSSSRPMHIGYSGSNIKTAIAILNCILA 186

  Fly    98 RQLCFEDPSCSAILEIIPRVCGPIPVSCSTVTVTKCQAALRTLQAFQFFRPTCLCKEPGMDPDCN 162
            |||||||||||||||||||||||:||:|||||||||||||||||||.||||||||||||:|||||
Mosquito   187 RQLCFEDPSCSAILEIIPRVCGPVPVACSTVTVTKCQAALRTLQAFPFFRPTCLCKEPGIDPDCN 251

  Fly   163 HFRDFLFDHPCGFVLKKAEKDPYPIDALPTCNHALSVCQQERKCLKLFEDFKTHCKVRDNKCKME 227
            :|||||||||||||.|| ||||||:|||||||||||||||||||:|||||||.|||||:|||:||
Mosquito   252 YFRDFLFDHPCGFVSKK-EKDPYPVDALPTCNHALSVCQQERKCIKLFEDFKLHCKVRENKCRME 315

  Fly   228 NRDACHDSWTNLRLSPMFGCICPNNHMKKRCDRIFNIVNHNPCVDRL-------------IFFPN 279
            :||.|:::||||||||||||||||||||:|||:||::||||||||.|             ..:||
Mosquito   316 DRDLCYEAWTNLRLSPMFGCICPNNHMKRRCDKIFSVVNHNPCVDVLPSALDISSGTATNSIYPN 380

  Fly   280 GLPK--LKQPRPKAK------PRPKPKPKSKPKPRQRHHGMNGTELMTNNIEYHDEP-------- 328
            ..|.  ::.|.|.:.      |..|..|.:           .|:.:....::|.:.|        
Mosquito   381 FFPSDIIEDPPPTSTYPYFLFPSKKYPPSA-----------FGSAIYHATVDYINLPDGPGTGTT 434

  Fly   329 NGLSDPEDEANETVDEDPGGHGDEDEDEEDDDYDDRIRAEIYSNYPHYLHPP---SWGINNPLVL 390
            ||.|...|:::.:......||..:....| ..|..|......::..|..|..   |.|.|.|:. 
Mosquito   435 NGSSPDTDQSSSSSSSSSPGHPRQHSGTE-HSYRTRYEHNFDTSMHHTKHQSPTHSSGNNAPIA- 497

  Fly   391 ASHSPHTLDDDDDVVVEVVANKKPPPVTLHHHNDELDHDVVVVVDAGPHSHSHPHSHTFYSHGDQ 455
                                   ||....|.|..:                  ||.|.::..|:.
Mosquito   498 -----------------------PPWPDQHQHQQQ------------------PHQHPYWHGGEN 521

  Fly   456 SSTTGSGLPGPAPTIPSPPNTGTKMHKTAPLGDLVAGSDITHRTYTGPSMDERVRILGMDEKLHQ 520
            .:...:|..|          ||.....:.|       ||:..:..|          :|.|     
Mosquito   522 GTADTAGHVG----------TGRWDSMSVP-------SDLQQQPET----------VGSD----- 554

  Fly   521 RIFNDNLALIDTPLIAMGSGSGSGTVTTSVSGYGLGMGMGLSGSFNYLGSMHGVPSYPFNISGFH 585
                                                                             
Mosquito   555 ----------------------------------------------------------------- 554

  Fly   586 QRHMAAAAADNEPFDIIDTGLGYGGNGNAGVYYQSGQDVEVDLSTEIIKQHFQSTCHTALDTCRE 650
                                                 |:| :...|:...|||||||.|||:||:
Mosquito   555 -------------------------------------DIE-EKEAEMSFIHFQSTCHLALDSCRD 581

  Fly   651 DPSCSSSLQPMLTHCELHRCNRNACMSSLQAFYKGPHEDLNLDIAFCLCKKTSSQQNGNGNRHDM 715
            |..|||:|:.:|.||:.|||||||||.|||:|||..|:||:||||||||:||.       ||||.
Mosquito   582 DQVCSSALKTVLMHCDQHRCNRNACMESLQSFYKSIHDDLSLDIAFCLCRKTP-------NRHDS 639

  Fly   716 CMIAQEKLHPVCAQRPPDN----SNPASSNGIYYHPPPACHVVADSCKEDRECRLKLEYYEQACA 776
            |||||||||||||||||::    .:.::.|||.|:.|||||.||:.|:||.:||.:||.:||:||
Mosquito   640 CMIAQEKLHPVCAQRPPESLSQQQSSSTGNGIAYNAPPACHAVAELCREDEDCRARLEVFEQSCA 704

  Fly   777 VDSVTKKCAGRPSGCRTAMIGILGTMLRTTCACQGTDPQHLYQCVGWRRLLWMNPCVVEAQKDFH 841
            ||||||||||:.|.||.||:|||||.|||||||||:|.|.||.|:||:||||:||||||:|||||
Mosquito   705 VDSVTKKCAGKTSACRQAMLGILGTPLRTTCACQGSDMQQLYDCLGWQRLLWLNPCVVESQKDFH 769

  Fly   842 MKRLAELGFLTTTTTTTTTTTTTTTTTTTRAP----PPPPPPTTTTTTTTSMQPRQTPR-KPATH 901
            :|||||||.||||||..|||||.|||||.|:.    ||..|||         :|:...| ||   
Mosquito   770 LKRLAELGLLTTTTTMATTTTTMTTTTTMRSTRITHPPTLPPT---------KPKPVYRPKP--- 822

  Fly   902 IFKDVITAKEKSEPTSVEHNYLDPPDSIPLPSVNVESG-------GNGGN----DDYHNGNGNGH 955
                       :|..::|.||::.||:.|...|:.::|       ..|.:    |:|....|..|
Mosquito   823 -----------TEMHTIETNYVETPDTRPETLVHNQNGLIERTDLDRGHSPPQPDEYDRSTGTRH 876

  Fly   956 GNGNGN-------GRRKNGGKGRGGSVDFDDPVIFVDPRETTEFVGISITEPVTTTTTTMATTTT 1013
            ...:.:       ||...|...|.     |:.|:.|   .:||...:....|.|.||||...|||
Mosquito   877 QPVDSDSEDDDMVGRYDKGIYQRP-----DEQVLHV---ASTEVQELETFPPTTVTTTTTEPTTT 933

  Fly  1014 TQPPRNCVVQRPRQSDQLIREGSSKRIYSLDDVECSELCSC--GESLILTCHALCVPFAPCRTAL 1076
            ..|.|.|||||..|.||||.||.|:|:|.|||.||||||:|  |:||.|||||||||.|||||||
Mosquito   934 PVPIRYCVVQRSHQPDQLIAEGKSRRLYILDDAECSELCTCGGGDSLALTCHALCVPLAPCRTAL 998

  Fly  1077 AFYSHASPAYQAFRGRCLCYSGRFICMKPPLGEYILPGGIFLLLGYSAADEALLRPHTNLGVQDA 1141
            |:||||:||||||||||||||||||||:||.|||.||||||||||||:.||||||||||||||||
Mosquito   999 AYYSHAAPAYQAFRGRCLCYSGRFICMRPPPGEYQLPGGIFLLLGYSSTDEALLRPHTNLGVQDA 1063

  Fly  1142 VRALQQYVTTYIDNQTQCTLTLFNMTEENIIIAARLPHDGKLKDIELLRKEKDECTAILKTISHQ 1206
            ||||||||..:|||.|.|||||||:||||||::.|||.|.||..::||:.|||:||.||:|||||
Mosquito  1064 VRALQQYVLQHIDNSTHCTLTLFNITEENIILSIRLPLDPKLTPMQLLKMEKDQCTRILETISHQ 1128

  Fly  1207 INSEHSELQSHRLLSIFKMSEVEVVWPESTSAAARSGHGP 1246
            ||:::.||.:|||||||||:||::|||| .|.|.|:...|
Mosquito  1129 INTQYVELSAHRLLSIFKMAEVQIVWPE-VSYARRNTTPP 1167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GfrlNP_001247206.1 GDNF 94..173 CDD:460537 73/78 (94%)
GDNF 193..270 CDD:460537 63/76 (83%)
GDNF 641..727 CDD:197975 57/85 (67%)
GDNF 751..832 CDD:460537 56/80 (70%)
GfrlXP_061497849.1 None

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