DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gfrl and gfra2b

DIOPT Version :10

Sequence 1:NP_001247206.1 Gene:Gfrl / 3346162 FlyBaseID:FBgn0262869 Length:1279 Species:Drosophila melanogaster
Sequence 2:XP_693326.5 Gene:gfra2b / 564916 ZFINID:ZDB-GENE-091204-26 Length:488 Species:Danio rerio


Alignment Length:229 Identity:48/229 - (20%)
Similarity:79/229 - (34%) Gaps:57/229 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   641 CHTALD---TCREDPSCSSSLQPMLTHC-------ELHR-CNRNACMSSLQAFYKGPHEDLNLDI 694
            |:..||   .|..:.:|......:|..|       :.|. |||..|...|:.|:.....:.:..:
Zfish   167 CNPCLDATKACNLNDTCKKQRTALLATCSPAAPISQAHEPCNRKRCHRGLRQFFDRVQTEFSYPL 231

  Fly   695 AFCLCKKTSSQQNGNGNRHDMCMIAQEKLHPVCAQRPPDNSNPASSNGIYYH--PPPACHVVADS 757
            .||.|:..:                       ||:|......||.|    |.  ..|.|..:..:
Zfish   232 LFCSCRDKA-----------------------CAERRRQTIMPACS----YEEKSKPNCLELRRT 269

  Fly   758 CKEDRECRLKLEYYEQACAV--DSVTKKCAGRPSGCRTAMIGILGT--------------MLRTT 806
            |:.|..||.:|..:...|..  .|:|........||..:.:|::|:              .:...
Zfish   270 CRSDPLCRSRLADFHMNCQTTPHSITSCPNDNYHGCLVSYVGLIGSDVTPNYVDASHTNITISPW 334

  Fly   807 CACQGTDPQHLYQCVGWRRLLWMNPCVVEAQKDF 840
            |.|:|:. .|..:|..:.|....|.|:..|.:.|
Zfish   335 CGCRGSG-NHEAECEAFLRDFRENTCLRNAIQAF 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GfrlNP_001247206.1 GDNF 94..173 CDD:460537
GDNF 193..270 CDD:460537
GDNF 641..727 CDD:197975 17/96 (18%)
GDNF 751..832 CDD:460537 20/96 (21%)
gfra2bXP_693326.5 GDNF 44..120 CDD:197975
GDNF 170..253 CDD:460537 20/105 (19%)
GDNF 263..359 CDD:460537 20/96 (21%)
Blue background indicates that the domain is not in the aligned region.

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